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NC_042018.1__YP_009612977.1__FDI45_gp233__00233

Bact-Vir

Identity

Accession:: NC_042018 ↗
Kingdom:: phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Risingsunvirus› Erwinia_phage_vB_EamM_RisingSun

TaxID: 2026080

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-76

PDB

D2 high residues 78-101_379-473

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4mk6A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.58	47.0	4.09e-01	89.1%	58.0%
2zopA00	1.10.520.30	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain	0.57	36.0	3.77e-01	89.1%	67.0%
4bjzA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.55	41.0	3.68e-01	79.0%	94.0%
1oglA01	1.20.1680.10	Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatases › Type II deoxyuridine triphosphatase	0.53	41.0	4.17e-01	82.4%	83.9%
4g12A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	43.0	4.07e-01	91.6%	76.5%
2g3bA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	42.0	3.69e-01	90.8%	61.5%
1fewA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	29.0	2.57e-01	100.0%	38.7%
4agsB04	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.50	35.0	3.37e-01	70.6%	90.2%
2l6xA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.50	42.0	3.43e-01	93.3%	84.3%
6g28A00	1.10.4080.10	Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1	0.50	45.0	3.24e-01	100.0%	72.1%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4090047	3921.1.1.1 ↗	alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr	0.56	49.0	4.24e-01	100.0%	81.0%
4957321	3896.1.1.0 ↗	alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase	0.54	45.0	3.74e-01	91.6%	90.2%
3834468	3745.1.1.1 ↗	alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex	0.53	43.0	3.19e-01	89.9%	87.7%
3617575	5067.1.1.3 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched	0.53	43.0	3.39e-01	87.4%	63.8%
3605158	4273.1.1.1 ↗	alpha arrays › PTPA-like › PTPA-like › PTPA-like › PTPA	0.52	47.0	3.55e-01	100.0%	52.6%
4370662	601.2.1.6 ↗	alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_B562	0.52	39.0	4.18e-01	87.4%	94.9%
3613134	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.52	37.0	3.51e-01	74.8%	78.6%
3985675	3579.1.1.30 ↗	extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Imp-YgjV	0.50	40.0	3.84e-01	100.0%	73.6%

D3 high residues 117-278

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ocqA01	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.60	44.0	3.87e-01	74.7%	87.5%
8b70A01	1.20.1740.10	Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I	0.58	46.0	3.44e-01	84.0%	85.2%
1b8dA00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.56	42.0	4.18e-01	76.5%	82.3%
5oklA01	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.52	25.0	3.07e-01	75.3%	69.3%
4iggB06	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	35.0	3.19e-01	70.4%	73.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4550741	106.1.1.7 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › Protoglobin	0.65	52.0	5.19e-01	85.8%	97.1%
3513249	106.1.1.1 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › Globin	0.62	51.0	5.04e-01	86.4%	100.0%
4955480	6155.1.1.8 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Pyr4-TMTC	0.59	36.0	3.80e-01	79.0%	65.3%
3695641	5051.1.1.10 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2	0.59	48.0	3.40e-01	85.2%	83.7%
4030861	5051.1.1.10 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2	0.58	47.0	3.39e-01	84.6%	80.4%
3695755	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	40.0	3.82e-01	71.0%	82.6%
3775080	3289.1.1.10 ↗	alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › FragX_IP	0.54	44.0	2.74e-01	86.4%	40.0%
3622578	604.28.1.1 ↗	alpha bundles › Spectrin repeat-like › E3 ubiquitin-protein ligase SHPRH second helical domain › E3 ubiquitin-protein ligase SHPRH second helical domain › SHPRH_helical-2nd	0.52	44.0	3.86e-01	90.1%	90.8%
3743598	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.52	36.0	4.10e-01	82.1%	92.8%
3444544	3615.1.1.0 ↗	alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain	0.52	42.0	4.37e-01	85.8%	89.7%
3545988	5050.1.1.4 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran	0.51	41.0	3.95e-01	98.8%	75.0%

D4 medium residues 282-360

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ksrA01	6.20.370.100	Special › Other non-globular › Rhinovirus 14, subunit 4 ›	0.63	23.0	3.33e-01	70.9%	96.0%
4lxjA01	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.56	46.0	3.04e-01	96.2%	60.3%
2c7yA00	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.50	42.0	2.79e-01	100.0%	82.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3555586	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.59	25.0	2.34e-01	72.2%	28.4%
3581414	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	27.0	3.10e-01	72.2%	60.0%
3618003	389.1.1.112 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29137	0.51	30.0	3.49e-01	83.5%	81.8%