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NC_042020.1__YP_009613225.1__FDI47_gp01__00001

Bact-Vir

NC_042020.1__YP_009613225.1__FDI47_gp01__00001

Identity

Accession:
NC_042020 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-75
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.67 56.0 4.23e-01 90.4% 77.0%
5e9hB01 1.10.10.850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 36.0 3.15e-01 71.2% 46.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3916154 558.1.1.0 alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain 0.57 40.0 3.88e-01 74.0% 100.0%
4485741 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 46.0 2.76e-01 100.0% 30.9%
D2 medium residues 87-183
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23359.2 best Lsr2_DNA-bd 50.2 1.70e-13 40.2% 89.2%