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NC_042020.1__YP_009613241.1__FDI47_gp17__00017
Bact-VirNC_042020.1__YP_009613241.1__FDI47_gp17__00017
Identity
- Accession:
- NC_042020 ↗
- Kingdom:
- phage
Quality
75.6
mean pLDDT
Taxonomy
TaxID: 2027883
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-112
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gbsA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.66 | 57.0 | 4.22e-01 | 100.0% | 59.3% |
| 2ar1A00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.63 | 54.0 | 3.95e-01 | 100.0% | 63.1% |
| 4rcjA01 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.63 | 53.0 | 3.98e-01 | 100.0% | 60.3% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 47.0 | 3.74e-01 | 100.0% | 39.5% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 48.0 | 3.85e-01 | 100.0% | 42.5% |
| 2xp1A02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 45.0 | 4.08e-01 | 100.0% | 58.7% |
| 3lifB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 45.0 | 3.38e-01 | 86.8% | 38.2% |
| 1x6cA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 48.0 | 3.84e-01 | 100.0% | 49.2% |
| 3r90A00 | 3.10.400.20 | Alpha Beta › Roll › Sulfate adenylyltransferase › | 0.57 | 49.0 | 3.41e-01 | 100.0% | 40.5% |
| 2gcuA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 46.0 | 3.06e-01 | 96.2% | 26.6% |
| 2o95B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 47.0 | 3.35e-01 | 100.0% | 34.1% |
| 3cjrB01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.54 | 37.0 | 3.43e-01 | 71.7% | 94.3% |
| 2vhhA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.54 | 43.0 | 2.78e-01 | 100.0% | 21.4% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 44.0 | 3.68e-01 | 100.0% | 59.3% |
| 1te7A00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.54 | 44.0 | 3.71e-01 | 100.0% | 97.1% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 33.0 | 3.26e-01 | 71.7% | 55.0% |
| 1hpwA00 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.53 | 41.0 | 3.26e-01 | 92.5% | 41.1% |
| 2b78A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.53 | 42.0 | 4.04e-01 | 100.0% | 93.9% |
| 2kcqA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 41.0 | 3.20e-01 | 100.0% | 36.6% |
| 5khaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 43.0 | 2.87e-01 | 100.0% | 25.0% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.50 | 38.0 | 3.26e-01 | 84.9% | 62.4% |
| 4ywrA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 41.0 | 2.82e-01 | 100.0% | 25.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3917719 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.72 | 52.0 | 5.55e-01 | 100.0% | 91.1% |
| 5002753 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 57.0 | 5.00e-01 | 100.0% | 92.9% |
| 3252646 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.65 | 57.0 | 4.21e-01 | 100.0% | 62.1% |
| 3418432 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.62 | 53.0 | 4.36e-01 | 100.0% | 83.8% |
| 3449375 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.62 | 53.0 | 3.94e-01 | 100.0% | 59.3% |
| 4999516 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.61 | 52.0 | 3.95e-01 | 100.0% | 61.5% |
| 3318934 | 1.1.9.29 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Dev_Cell_Death | 0.61 | 51.0 | 3.90e-01 | 100.0% | 65.2% |
| 3933443 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.61 | 48.0 | 4.48e-01 | 100.0% | 68.6% |
| 3320541 | 1.1.9.29 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Dev_Cell_Death | 0.60 | 50.0 | 3.79e-01 | 100.0% | 60.0% |
| None | — | 0.59 | 50.0 | 3.32e-01 | 100.0% | 23.9% | |
| 3059161 | 1.1.13.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 | 0.58 | 47.0 | 4.27e-01 | 100.0% | 86.6% |
| 3353524 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.58 | 41.0 | 4.23e-01 | 86.8% | 80.0% |
| None | — | 0.56 | 48.0 | 4.18e-01 | 100.0% | 89.4% | |
| 3837623 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.56 | 47.0 | 2.97e-01 | 100.0% | 26.8% |
| 3414159 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.56 | 48.0 | 4.17e-01 | 100.0% | 88.2% |
| 3511994 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.56 | 46.0 | 4.10e-01 | 100.0% | 87.1% |
| 3701932 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 47.0 | 3.72e-01 | 100.0% | 63.3% |
| 3622767 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.55 | 46.0 | 3.87e-01 | 100.0% | 53.7% |
| 4217929 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.55 | 47.0 | 3.51e-01 | 100.0% | 44.1% |
| 3480390 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.55 | 47.0 | 4.03e-01 | 100.0% | 90.0% |
| 3923528 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 46.0 | 2.91e-01 | 96.2% | 25.1% |
| 5063642 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.54 | 45.0 | 3.82e-01 | 100.0% | 76.0% |
| 3722977 | 2003.1.5.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 | 0.54 | 45.0 | 3.08e-01 | 100.0% | 23.6% |
| 4946184 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 44.0 | 4.00e-01 | 100.0% | 90.0% |
| 3218512 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.53 | 46.0 | 3.73e-01 | 100.0% | 55.2% |
| 4934192 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.53 | 43.0 | 3.34e-01 | 100.0% | 38.6% |
| 5079425 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.53 | 43.0 | 3.79e-01 | 100.0% | 80.0% |
| 3579037 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 39.0 | 3.32e-01 | 100.0% | 43.8% |
| 3202775 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.53 | 44.0 | 3.75e-01 | 100.0% | 88.4% |
| 3213692 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.52 | 43.0 | 3.13e-01 | 100.0% | 30.6% |
| 3276126 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 43.0 | 3.13e-01 | 100.0% | 31.8% |
| 4557607 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.52 | 42.0 | 4.06e-01 | 100.0% | 86.2% |
| 4576540 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.51 | 42.0 | 4.12e-01 | 100.0% | 88.3% |
| 3580766 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 41.0 | 3.17e-01 | 100.0% | 86.2% |
| 3889819 | 210.1.2.6 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Phospholip_B | 0.50 | 40.0 | 2.41e-01 | 100.0% | 61.4% |
| 3481325 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.50 | 38.0 | 3.08e-01 | 90.6% | 70.4% |