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NC_042020.1__YP_009613273.1__FDI47_gp49__00049

Bact-Vir

NC_042020.1__YP_009613273.1__FDI47_gp49__00049

Identity

Accession:
NC_042020 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-56
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.87 74.0 5.68e-01 100.0% 44.2%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 75.0 6.61e-01 98.0% 80.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 65.0 6.21e-01 100.0% 80.0%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.78 71.0 6.21e-01 100.0% 98.6%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 68.0 6.20e-01 100.0% 89.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.77 67.0 5.78e-01 100.0% 62.3%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 65.0 5.97e-01 100.0% 91.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 66.0 6.09e-01 100.0% 92.2%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.74 66.0 6.27e-01 100.0% 84.5%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 64.0 6.12e-01 100.0% 98.3%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 61.0 5.55e-01 100.0% 80.0%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.12e-01 100.0% 57.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 5.14e-01 100.0% 67.9%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.82e-01 100.0% 97.9%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 55.0 5.08e-01 92.0% 95.5%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 58.0 4.68e-01 100.0% 53.0%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 57.0 4.00e-01 100.0% 34.1%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 53.0 4.41e-01 96.0% 70.1%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 47.0 3.32e-01 88.0% 24.2%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.63 47.0 3.74e-01 88.0% 45.8%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.63 54.0 3.84e-01 100.0% 57.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 53.0 4.19e-01 100.0% 56.9%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.61 44.0 3.81e-01 78.0% 78.6%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 50.0 3.72e-01 94.0% 61.9%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 40.0 3.28e-01 70.0% 35.3%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 3.56e-01 94.0% 82.6%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.31e-01 96.0% 71.8%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.57 49.0 4.00e-01 100.0% 80.8%
3lhoA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.57 42.0 2.76e-01 82.0% 19.7%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 40.0 2.84e-01 76.0% 74.7%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.56 45.0 3.49e-01 100.0% 69.3%
4fajA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.55 40.0 3.09e-01 80.0% 91.1%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.40e-01 94.0% 89.4%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.55 47.0 3.54e-01 100.0% 68.2%
1xocA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.55 45.0 3.44e-01 94.0% 83.3%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 42.0 3.71e-01 92.0% 55.0%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.28e-01 94.0% 62.6%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.29e-01 94.0% 57.5%
4bd4A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.54 44.0 3.56e-01 100.0% 95.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.52 38.0 3.36e-01 94.0% 48.8%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.72e-01 96.0% 63.0%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 39.0 2.78e-01 92.0% 57.8%
4oevA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.52 42.0 3.34e-01 96.0% 85.2%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.52 40.0 3.91e-01 92.0% 84.7%
1uqwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 38.0 3.01e-01 82.0% 88.4%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.07e-01 82.0% 86.5%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 35.0 3.04e-01 76.0% 81.8%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.50 38.0 3.49e-01 96.0% 74.4%
5oj2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.00e-01 80.0% 82.0%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3936430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 75.0 6.24e-01 100.0% 56.2%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.88 81.0 5.78e-01 100.0% 40.0%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 80.0 6.76e-01 100.0% 91.3%
3815480 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 73.0 6.63e-01 100.0% 69.2%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 75.0 6.36e-01 100.0% 58.7%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 73.0 6.85e-01 100.0% 75.0%
3368864 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.87 79.0 7.20e-01 100.0% 83.1%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 72.0 6.21e-01 100.0% 60.0%
3577505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 72.0 5.96e-01 100.0% 52.9%
3621818 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.87 71.0 7.12e-01 100.0% 88.0%
3815479 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 72.0 6.21e-01 100.0% 60.0%
3993250 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.87 71.0 6.85e-01 100.0% 80.0%
3503815 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 72.0 5.93e-01 100.0% 52.9%
3626694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 71.0 5.78e-01 100.0% 50.0%
3389311 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 72.0 5.66e-01 100.0% 46.0%
3707347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 71.0 6.90e-01 100.0% 81.8%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 71.0 6.27e-01 100.0% 64.3%
3706998 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 72.0 6.77e-01 100.0% 76.7%
3622055 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.85 70.0 5.80e-01 100.0% 52.9%
3784140 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 76.0 7.38e-01 100.0% 92.7%
3829476 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.84 75.0 5.03e-01 100.0% 28.0%
3828371 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.83 76.0 6.28e-01 100.0% 67.1%
3926207 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 75.0 7.38e-01 100.0% 94.3%
3457106 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.83 75.0 6.84e-01 100.0% 83.1%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 74.0 7.18e-01 100.0% 87.3%
3482559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 77.0 5.13e-01 100.0% 54.1%
3561707 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 67.0 5.32e-01 100.0% 45.0%
3475965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 65.0 6.83e-01 98.0% 97.8%
3886139 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.81 75.0 6.77e-01 100.0% 81.5%
4028731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 73.0 6.62e-01 100.0% 86.2%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 69.0 6.33e-01 98.0% 93.8%
4218488 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 70.0 6.01e-01 100.0% 73.8%
3575253 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 66.0 5.92e-01 94.0% 84.3%
3482680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 69.0 6.38e-01 100.0% 90.8%
3546727 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 68.0 5.32e-01 100.0% 61.1%
3503332 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.22e-01 98.0% 98.5%
3624228 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 67.0 5.92e-01 100.0% 94.7%
3566631 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 68.0 5.84e-01 100.0% 73.8%
3737805 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 66.0 5.86e-01 100.0% 94.7%
3743464 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 66.0 5.84e-01 100.0% 81.3%
3937776 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.75 68.0 5.93e-01 100.0% 86.3%
3501312 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.15e-01 100.0% 86.2%
3782313 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 66.0 5.80e-01 100.0% 81.3%
3475429 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.86e-01 100.0% 92.9%
3999507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.76e-01 100.0% 87.1%
2803945 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.74 62.0 4.45e-01 100.0% 33.3%
160765 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 64.0 5.60e-01 100.0% 81.8%
3866571 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.73 64.0 3.71e-01 100.0% 11.9%
4953223 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.73 60.0 6.02e-01 100.0% 90.0%
5035177 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.73 57.0 5.57e-01 100.0% 79.6%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 63.0 5.82e-01 100.0% 93.8%
3936225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.73e-01 100.0% 81.4%
4951012 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.73 58.0 5.85e-01 100.0% 88.0%
4957377 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.72 57.0 5.35e-01 100.0% 69.8%
4182884 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.72 62.0 4.80e-01 100.0% 50.4%
3924760 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.22e-01 100.0% 63.3%
5003618 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 55.0 5.78e-01 100.0% 95.6%
4031159 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.71 61.0 4.35e-01 100.0% 38.3%
2561577 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.69 56.0 5.30e-01 100.0% 75.4%
4927397 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 4.09e-01 100.0% 61.8%
3964422 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 58.0 4.09e-01 100.0% 30.6%
4034057 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.67 58.0 4.59e-01 100.0% 50.5%
4028997 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 4.57e-01 96.0% 78.9%
3887433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.22e-01 100.0% 98.3%
3399755 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.63 49.0 4.40e-01 96.0% 60.0%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 48.0 3.51e-01 88.0% 30.4%
5013238 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.16e-01 100.0% 75.0%
3617025 220.1.1.56 beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.62 54.0 4.10e-01 100.0% 65.6%
3948209 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.56e-01 100.0% 70.7%
3871253 220.1.1.122 beta barrels › PH domain-like › PH domain-like › PH domain-like › C2_SHIP1-2_first 0.61 48.0 3.61e-01 94.0% 47.9%
3614247 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.60e-01 90.0% 85.6%
4955693 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 3.56e-01 74.0% 91.8%
3953711 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.59 49.0 3.58e-01 94.0% 60.0%
3959863 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 50.0 3.58e-01 94.0% 60.0%
3643001 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.70e-01 98.0% 63.3%
3282239 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.58 46.0 3.51e-01 94.0% 66.7%
3249925 11.1.1.820 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.57 43.0 3.75e-01 88.0% 83.5%
3196282 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.56 47.0 3.72e-01 100.0% 47.5%
3520119 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.56 43.0 2.62e-01 88.0% 19.2%
3619778 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 41.0 2.62e-01 82.0% 27.1%
3695678 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.55 44.0 2.69e-01 96.0% 19.5%
3240511 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 44.0 3.67e-01 100.0% 58.1%
4628536 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 38.0 3.04e-01 76.0% 59.1%
3821284 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 42.0 2.69e-01 96.0% 40.3%
5020252 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 44.0 3.48e-01 100.0% 45.8%
4016769 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.50 39.0 2.69e-01 90.0% 82.3%