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NC_042025.1__YP_009613558.1__FDI52_gp29__00029

Bact-Vir

Identity

Accession:: NC_042025 ↗
Kingdom:: phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nonagvirus› Salmonella_phage_SE1_(in:Nonagvirus)

TaxID: 2115848

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-62

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ywzB00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.55	46.0	3.50e-01	94.8%	48.6%
2giaA00	2.30.31.40	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A ›	0.55	41.0	3.12e-01	82.8%	61.7%
4irzA01	2.130.10.130	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal	0.54	45.0	2.75e-01	100.0%	20.6%
3hk4A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	45.0	3.72e-01	100.0%	96.6%
3f40A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	45.0	3.80e-01	100.0%	90.1%
4u13A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	44.0	3.72e-01	98.3%	94.5%
7rpyA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	44.0	3.83e-01	100.0%	94.2%
2qkpD00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.53	39.0	3.23e-01	89.7%	72.4%
3vsfC01	2.115.10.20	Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43	0.52	42.0	2.73e-01	100.0%	44.4%
4ci8A02	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.52	43.0	2.81e-01	100.0%	26.5%
6eotD01	2.140.10.30	Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain	0.52	43.0	2.59e-01	100.0%	41.9%
3b59A01	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.52	42.0	3.36e-01	91.4%	47.1%
3ebtA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.52	42.0	3.42e-01	100.0%	89.3%
2bngC00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	42.0	3.35e-01	100.0%	79.3%
3lifB01	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.51	40.0	3.20e-01	94.8%	49.3%
2e12A00	2.30.30.720	Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247)	0.51	41.0	3.59e-01	93.1%	78.5%
3lygA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	42.0	3.49e-01	100.0%	90.8%
2l55A00	2.40.50.320	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF	0.51	39.0	3.58e-01	87.9%	74.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3697154	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.56	45.0	3.48e-01	91.4%	40.0%
3968741	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.54	42.0	3.27e-01	96.6%	57.5%
3278065	4312.1.1.4 ↗	a+b two layers › RelE-like › RelE-like › RelE-like › Gp49	0.53	44.0	3.69e-01	98.3%	76.4%
4023011	2003.1.3.5 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8	0.51	39.0	2.66e-01	84.5%	45.7%
3933455	3369.1.1.1 ↗	beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal	0.51	40.0	2.95e-01	93.1%	84.3%
3830352	4.1.1.94 ↗	beta barrels › SH3 › SH3 › SH3 › SAWADEE	0.51	42.0	3.71e-01	93.1%	75.3%