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NC_042025.1__YP_009613566.1__FDI52_gp37__00037

Bact-Vir

NC_042025.1__YP_009613566.1__FDI52_gp37__00037

Identity

Accession:
NC_042025 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-100
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.67 47.0 4.08e-01 73.0% 59.6%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.65 45.0 4.94e-01 100.0% 88.7%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.65 48.0 3.43e-01 77.5% 50.4%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.64 48.0 4.72e-01 78.7% 85.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.63 54.0 5.30e-01 98.9% 99.0%
1x23B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 55.0 4.64e-01 98.9% 73.0%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.63 45.0 3.03e-01 75.3% 34.6%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 51.0 5.19e-01 92.1% 87.6%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.62 46.0 3.10e-01 79.8% 43.5%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.61 54.0 5.11e-01 100.0% 82.4%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 53.0 4.49e-01 98.9% 67.8%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 43.0 4.40e-01 100.0% 77.9%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 44.0 3.72e-01 76.4% 72.7%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.60 48.0 4.22e-01 86.5% 87.0%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.60 47.0 4.00e-01 85.4% 78.5%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 45.0 3.46e-01 83.1% 68.3%
4j56E00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 46.0 4.35e-01 80.9% 100.0%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 3.89e-01 91.0% 63.2%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 46.0 3.31e-01 83.1% 86.9%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 45.0 4.25e-01 97.8% 65.5%
7ahfA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 51.0 4.43e-01 98.9% 75.3%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.59 41.0 4.52e-01 73.0% 91.4%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 54.0 4.64e-01 100.0% 71.1%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 46.0 3.29e-01 84.3% 97.4%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.58 47.0 4.65e-01 87.6% 81.9%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.14e-01 96.6% 94.4%
5j7dC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 43.0 4.09e-01 77.5% 100.0%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.92e-01 86.5% 70.9%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.91e-01 84.3% 73.0%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 3.78e-01 96.6% 70.3%
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 40.0 3.90e-01 75.3% 66.3%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.86e-01 84.3% 72.9%
1q7lA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 51.0 3.97e-01 100.0% 54.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 46.0 3.99e-01 87.6% 88.9%
5ykwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 44.0 4.20e-01 98.9% 71.7%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 40.0 3.60e-01 76.4% 51.5%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.56 48.0 3.33e-01 96.6% 64.0%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.99e-01 93.3% 79.9%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.17e-01 85.4% 88.2%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 43.0 3.75e-01 93.3% 54.6%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.45e-01 80.9% 74.8%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.34e-01 98.9% 81.9%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 47.0 3.70e-01 97.8% 96.1%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 3.06e-01 94.4% 91.0%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.52 41.0 3.36e-01 88.8% 49.7%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 40.0 4.01e-01 88.8% 80.2%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 3.00e-01 85.4% 46.4%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 39.0 3.29e-01 85.4% 55.2%
5l77A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 43.0 3.79e-01 95.5% 88.7%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 44.0 4.18e-01 100.0% 87.9%
4bumX00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.50 39.0 2.78e-01 84.3% 73.1%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979757 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.73 66.0 5.44e-01 97.8% 83.1%
4122018 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.69 60.0 5.76e-01 94.4% 97.0%
3870867 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.69 55.0 4.96e-01 91.0% 63.3%
3787121 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.68 59.0 5.28e-01 94.4% 96.0%
4346250 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.68 60.0 5.20e-01 98.9% 95.7%
3479226 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.66 57.0 5.48e-01 95.5% 100.0%
4123780 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.66 50.0 3.90e-01 80.9% 81.9%
3596980 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.66 49.0 3.75e-01 78.7% 93.7%
3257536 813.1.1.2 a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 0.65 52.0 3.94e-01 85.4% 75.7%
1097232 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.65 49.0 4.61e-01 78.7% 74.8%
3183304 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 55.0 4.76e-01 95.5% 93.8%
None 0.65 45.0 3.02e-01 70.8% 61.5%
3428734 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 49.0 3.17e-01 84.3% 62.2%
3727720 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.62 54.0 4.44e-01 98.9% 64.8%
3788335 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.62 44.0 2.87e-01 75.3% 65.6%
3614362 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.61 45.0 3.55e-01 78.7% 88.7%
4978331 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.60 41.0 4.46e-01 89.9% 88.6%
4958749 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.60 45.0 3.58e-01 80.9% 69.5%
3366478 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.60 51.0 4.35e-01 95.5% 71.6%
1141888 331.10.2.2 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SpmSyn_N 0.60 48.0 4.73e-01 89.9% 80.2%
169039 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.60 48.0 4.22e-01 86.5% 87.0%
5046913 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 53.0 5.04e-01 97.8% 93.2%
4984586 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.59 49.0 4.56e-01 88.8% 76.4%
3951048 331.4.1.17 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › ResB 0.59 48.0 4.37e-01 88.8% 70.8%
3788774 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 51.0 4.44e-01 98.9% 87.6%
3217309 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.59 42.0 4.22e-01 74.2% 91.1%
4999447 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 51.0 3.52e-01 93.3% 30.4%
3282714 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 47.0 4.04e-01 87.6% 88.2%
4015014 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.58 45.0 3.33e-01 84.3% 98.0%
3403106 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.58 51.0 4.21e-01 100.0% 65.5%
4125992 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.58 46.0 3.19e-01 86.5% 30.3%
3174740 11.1.1.44 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.57 45.0 3.77e-01 84.3% 86.0%
3789706 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 49.0 4.08e-01 100.0% 67.6%
3477584 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.56 50.0 3.48e-01 100.0% 91.3%
3684111 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.56 45.0 3.22e-01 89.9% 55.5%
3619070 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.56 49.0 4.07e-01 100.0% 68.5%
3802207 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 44.0 2.99e-01 84.3% 92.1%
4021124 5.1.5.88 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.55 43.0 2.71e-01 85.4% 79.4%
2841854 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.55 45.0 4.01e-01 89.9% 98.5%
3468705 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 41.0 2.74e-01 79.8% 31.6%
3691196 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 44.0 3.19e-01 89.9% 70.9%
3365419 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.55 43.0 3.73e-01 84.3% 71.4%
3327504 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 41.0 2.82e-01 100.0% 21.8%
3224154 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.54 44.0 3.02e-01 91.0% 94.8%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 3.11e-01 97.8% 82.3%
3513019 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.54 47.0 3.50e-01 98.9% 89.1%
3978756 3197.1.1.1 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.54 39.0 3.55e-01 80.9% 56.7%
1030915 10.12.1.27 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.52 43.0 3.72e-01 91.0% 60.3%
3587789 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.51 34.0 3.28e-01 85.4% 58.1%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 37.0 4.04e-01 89.9% 97.1%
4030051 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.51 46.0 2.97e-01 97.8% 29.5%
3670918 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.50 41.0 2.79e-01 100.0% 22.8%
3288997 304.125.1.2 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins › DUF6461 0.50 43.0 3.67e-01 97.8% 83.3%