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NC_042025.1__YP_009613583.1__FDI52_gp54__00054

Bact-Vir

NC_042025.1__YP_009613583.1__FDI52_gp54__00054

Identity

Accession:
NC_042025 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 218-330
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 47.0 6.07e-01 92.0% 94.0%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 51.0 5.72e-01 92.0% 77.8%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 50.0 5.68e-01 93.8% 79.1%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 53.0 4.91e-01 100.0% 53.7%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 46.0 5.97e-01 91.2% 100.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 52.0 4.74e-01 100.0% 51.4%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 46.0 5.38e-01 89.4% 78.3%
3b73B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 49.0 5.45e-01 100.0% 77.5%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 52.0 5.84e-01 100.0% 85.1%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 51.0 5.24e-01 100.0% 67.0%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 50.0 5.96e-01 94.7% 92.3%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 50.0 5.46e-01 100.0% 76.3%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 50.0 5.72e-01 100.0% 85.7%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.78 51.0 4.03e-01 100.0% 33.8%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 49.0 5.34e-01 100.0% 76.3%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.78 47.0 5.92e-01 92.0% 98.6%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 5.94e-01 99.1% 92.9%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 46.0 5.70e-01 93.8% 95.8%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 48.0 5.18e-01 99.1% 75.5%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 47.0 4.96e-01 100.0% 68.3%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 5.32e-01 100.0% 76.2%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.27e-01 100.0% 74.3%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 5.06e-01 100.0% 68.8%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 47.0 4.89e-01 98.2% 69.2%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 45.0 5.51e-01 92.0% 98.6%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 55.0 5.74e-01 100.0% 84.0%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 5.56e-01 99.1% 94.0%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.38e-01 99.1% 81.4%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.08e-01 100.0% 71.3%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 5.77e-01 99.1% 100.0%
3fx3B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 48.0 5.15e-01 99.1% 80.0%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 4.45e-01 100.0% 56.1%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.56e-01 100.0% 86.4%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 46.0 5.17e-01 100.0% 88.2%
2xubA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 44.0 4.83e-01 92.0% 78.3%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.67 46.0 5.23e-01 94.7% 98.8%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.52 39.0 4.02e-01 89.4% 84.9%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666925 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.81 60.0 5.79e-01 100.0% 68.8%
3296790 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.81 58.0 6.04e-01 99.1% 79.0%
3661331 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.79 61.0 5.21e-01 100.0% 52.9%
3163573 101.1.2.52 alpha arrays › HTH › HTH › winged helix domain › KicB 0.79 60.0 6.05e-01 100.0% 78.3%
3433454 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.79 59.0 5.40e-01 100.0% 60.7%
3441807 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.79 57.0 6.41e-01 100.0% 98.8%
3655482 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.79 62.0 5.21e-01 100.0% 51.7%
3681296 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.78 57.0 5.09e-01 100.0% 54.8%
3466475 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.78 58.0 5.49e-01 100.0% 66.2%
4543264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.22e-01 100.0% 54.5%
3385015 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.78 59.0 5.42e-01 100.0% 62.9%
3372061 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.78 57.0 5.25e-01 99.1% 60.7%
3832037 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 55.0 4.05e-01 100.0% 29.6%
3676374 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.77 58.0 5.18e-01 100.0% 56.8%
3464139 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.77 58.0 5.81e-01 100.0% 76.5%
3943865 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 55.0 5.36e-01 100.0% 68.3%
3442450 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.77 57.0 5.31e-01 100.0% 62.9%
3422147 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.76 59.0 3.97e-01 100.0% 23.9%
3434805 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.76 60.0 6.21e-01 100.0% 88.6%
3868765 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.76 56.0 6.13e-01 98.2% 91.6%
3429589 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.76 57.0 5.18e-01 100.0% 60.7%
3441608 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 57.0 6.28e-01 100.0% 97.8%
3802262 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 56.0 5.18e-01 100.0% 62.1%
3426019 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 57.0 5.16e-01 100.0% 60.7%
3366509 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 57.0 4.04e-01 100.0% 28.9%
3423032 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 57.0 5.27e-01 100.0% 63.6%
3682747 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 56.0 4.16e-01 100.0% 32.6%
3444653 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 56.0 5.43e-01 100.0% 70.4%
3451047 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 56.0 5.52e-01 100.0% 73.3%
3297411 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 54.0 5.99e-01 96.5% 93.3%
3313321 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 54.0 4.73e-01 96.5% 52.5%
3680263 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 56.0 4.77e-01 100.0% 50.3%
4167796 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 57.0 4.48e-01 100.0% 41.4%
3659873 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.75 56.0 5.82e-01 100.0% 83.8%
3466906 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 56.0 4.92e-01 100.0% 55.0%
4107533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 56.0 5.37e-01 100.0% 68.5%
4163738 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 56.0 5.07e-01 100.0% 59.3%
3458278 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 56.0 3.61e-01 100.0% 18.9%
3322387 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 56.0 4.89e-01 100.0% 55.0%
3663727 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 57.0 5.87e-01 100.0% 85.7%
3446918 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 55.0 5.14e-01 100.0% 62.9%
3662349 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.73 59.0 5.79e-01 100.0% 79.2%
3455640 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.73 55.0 6.12e-01 100.0% 98.9%
3447799 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.73 55.0 5.21e-01 100.0% 67.7%
3253867 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.73 52.0 4.91e-01 94.7% 61.5%
1166576 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 54.0 5.53e-01 100.0% 80.4%
3739675 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 55.0 5.60e-01 100.0% 80.0%
4506543 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 6.01e-01 93.8% 100.0%
5017859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 51.0 5.66e-01 92.0% 92.2%
3450159 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.72 54.0 4.91e-01 100.0% 60.7%
4966155 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 55.0 5.41e-01 100.0% 75.8%
4344692 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 5.88e-01 92.9% 100.0%
3422945 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.71 57.0 5.40e-01 100.0% 73.1%
4627913 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.71 49.0 5.31e-01 98.2% 84.2%
3597308 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 5.01e-01 95.6% 63.4%
3738271 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.70 58.0 5.96e-01 100.0% 90.0%
3441136 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 63.0 5.32e-01 100.0% 60.0%
3914234 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 6.17e-01 100.0% 97.1%
5048841 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 55.0 5.37e-01 100.0% 76.7%
4025377 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 49.0 5.66e-01 92.9% 96.5%
3787825 101.1.2.539 alpha arrays › HTH › HTH › winged helix domain › WH_GDS1 0.69 53.0 5.05e-01 94.7% 68.4%
5073218 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 47.0 5.19e-01 96.5% 86.7%
3167709 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.68 58.0 5.78e-01 100.0% 88.7%
4971711 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.32e-01 100.0% 76.0%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 5.24e-01 100.0% 75.2%
4545670 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 53.0 5.62e-01 100.0% 92.9%
3244600 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.68 55.0 5.73e-01 100.0% 92.4%
3433965 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 58.0 5.38e-01 100.0% 73.6%
3323743 101.1.2.401 alpha arrays › HTH › HTH › winged helix domain › WH_GTF3C1_N 0.67 53.0 5.69e-01 100.0% 98.9%
4575460 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.67 57.0 5.82e-01 100.0% 93.6%
3785317 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.67 56.0 5.52e-01 100.0% 84.2%
3590074 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 4.71e-01 92.9% 69.6%
3413597 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.66 47.0 3.27e-01 93.8% 23.8%
3472168 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.66 60.0 5.64e-01 100.0% 82.2%
3461917 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.66 57.0 5.80e-01 100.0% 94.5%
3420789 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.64 59.0 5.77e-01 100.0% 92.5%
3635542 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 58.0 5.14e-01 100.0% 85.0%
3501318 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.63 58.0 3.92e-01 100.0% 40.5%
3701445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.68e-01 98.2% 71.9%
3685188 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.61 53.0 4.52e-01 100.0% 59.2%
3493127 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.61 55.0 4.91e-01 100.0% 91.3%
3744566 327.11.2.31 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Mug60-KHD4 0.57 29.0 3.37e-01 92.0% 67.5%
4201034 101.1.2.41 alpha arrays › HTH › HTH › winged helix domain › FokI_dom_2 0.57 52.0 4.73e-01 100.0% 84.7%
3846407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.33e-01 91.2% 91.3%
4071151 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.55 33.0 3.25e-01 100.0% 51.5%
3239152 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.52 32.0 3.63e-01 89.4% 81.2%
3629136 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.52 32.0 3.60e-01 92.0% 78.9%
2808872 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.50 31.0 3.39e-01 89.4% 75.6%
D2 medium residues 99-210
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7wd3A04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 40.0 4.76e-01 76.8% 82.1%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.69 36.0 4.00e-01 71.4% 63.6%
6fmhB01 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.67 49.0 4.23e-01 75.9% 64.0%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 42.0 4.11e-01 74.1% 60.8%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 41.0 3.69e-01 73.2% 46.1%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 44.0 3.58e-01 71.4% 41.9%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 47.0 3.83e-01 80.4% 100.0%
4gycA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.62 46.0 3.72e-01 79.5% 42.7%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 46.0 3.85e-01 79.5% 83.5%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.61 45.0 4.93e-01 77.7% 98.9%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 42.0 3.88e-01 71.4% 73.6%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.61 45.0 4.07e-01 78.6% 86.0%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.60 41.0 3.98e-01 75.9% 62.6%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.60 42.0 4.60e-01 88.4% 91.1%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.60 42.0 4.20e-01 73.2% 71.8%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.60 42.0 3.93e-01 73.2% 74.6%
2mgyA01 1.20.1260.100 Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein 0.58 45.0 4.01e-01 83.0% 95.0%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 44.0 4.14e-01 79.5% 70.1%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 41.0 4.42e-01 78.6% 88.4%
7uzqK01 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.57 47.0 3.36e-01 92.0% 93.9%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 43.0 3.49e-01 78.6% 91.9%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.56 38.0 4.03e-01 100.0% 75.7%
3fedA03 1.20.930.40 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain 0.56 40.0 3.61e-01 73.2% 94.2%
3vr4B04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.56 41.0 3.75e-01 77.7% 58.9%
2hfsA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.55 35.0 3.22e-01 81.2% 49.3%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 33.0 3.53e-01 71.4% 70.2%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.54 34.0 4.06e-01 74.1% 94.7%
5tpmB00 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.53 40.0 3.77e-01 80.4% 85.1%
1cm5A00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.51 46.0 2.79e-01 99.1% 66.8%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 3.58e-01 76.8% 71.1%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391392 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 45.0 5.31e-01 75.0% 80.0%
4101262 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 47.0 5.29e-01 76.8% 76.7%
5044338 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 55.0 5.68e-01 94.6% 88.6%
3758587 7015.1.1.6 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › AGMP_C 0.68 46.0 3.94e-01 78.6% 44.6%
3183786 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.68 44.0 4.86e-01 71.4% 83.1%
3750176 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.66 49.0 3.77e-01 78.6% 65.1%
3581608 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.63 45.0 4.69e-01 83.9% 79.0%
3939441 5067.1.1.2 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.63 49.0 3.94e-01 83.0% 47.6%
5079053 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.63 45.0 4.32e-01 74.1% 73.1%
3997160 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.63 45.0 4.73e-01 78.6% 83.0%
3591364 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 38.0 4.17e-01 75.0% 74.4%
3980912 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.62 45.0 4.52e-01 79.5% 73.0%
5059074 5076.2.1.18 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF6159 0.62 48.0 3.90e-01 83.0% 46.8%
4011291 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 48.0 4.80e-01 84.8% 80.9%
3216342 601.1.1.95 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › F_actin_bind 0.61 43.0 4.31e-01 78.6% 71.1%
1225266 605.4.1.1 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › Rop 0.61 41.0 4.53e-01 75.0% 88.6%
3470992 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.61 41.0 4.30e-01 74.1% 77.0%
3215515 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.60 40.0 4.41e-01 71.4% 85.6%
3920270 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.59 42.0 3.91e-01 74.1% 59.3%
4016062 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 41.0 4.52e-01 76.8% 94.1%
4338918 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.58 42.0 4.06e-01 74.1% 86.4%
1148151 3861.1.1.1 alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR 0.58 45.0 3.94e-01 83.0% 89.9%
4000508 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.58 47.0 3.65e-01 88.4% 41.6%
3976441 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.57 41.0 4.01e-01 75.0% 67.2%
4982020 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.57 44.0 3.47e-01 83.9% 40.0%
3658835 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.57 43.0 4.20e-01 78.6% 75.0%
4955443 3542.1.1.0 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases 0.57 43.0 3.35e-01 81.2% 100.0%
4102845 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.56 39.0 3.90e-01 76.8% 66.7%
3246141 5067.1.1.3 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.56 45.0 3.71e-01 91.1% 45.5%
3761374 3826.1.1.36 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Mito_carr 0.55 42.0 4.15e-01 81.2% 98.4%
3242134 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.55 42.0 3.26e-01 80.4% 53.3%
4510378 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.55 47.0 3.68e-01 95.5% 73.1%
4362754 5086.1.1.86 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG 0.54 36.0 3.54e-01 74.1% 62.5%
3836366 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.54 40.0 3.60e-01 78.6% 57.0%
4106251 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.54 46.0 3.52e-01 95.5% 75.6%
3164482 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 38.0 3.17e-01 74.1% 77.3%
3418792 3755.3.1.400 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NET2A_C 0.52 38.0 3.38e-01 75.9% 73.1%
3433406 5086.1.1.148 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF679 0.51 35.0 3.96e-01 73.2% 92.9%
4942757 606.1.1.1 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.51 36.0 3.75e-01 74.1% 95.2%
3995508 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 36.0 3.46e-01 75.9% 73.3%