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NC_042028.1__YP_009613790.1__FDI57_gp25__00025

Bact-Vir

NC_042028.1__YP_009613790.1__FDI57_gp25__00025

Identity

Accession:
NC_042028 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-92
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 52.0 5.24e-01 92.6% 72.0%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 50.0 5.67e-01 92.6% 98.3%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.33e-01 92.6% 80.8%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 5.40e-01 92.6% 82.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 5.47e-01 88.9% 95.3%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.95e-01 92.6% 79.5%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.16e-01 92.6% 80.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.00e-01 92.6% 81.7%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.15e-01 92.6% 89.7%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.38e-01 92.6% 57.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 50.0 5.38e-01 85.2% 95.5%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 47.0 5.25e-01 95.1% 100.0%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 4.92e-01 92.6% 81.6%
1y7xA02 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.66 40.0 4.53e-01 92.6% 85.7%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.27e-01 88.9% 90.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 47.0 4.87e-01 86.4% 81.3%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.79e-01 90.1% 81.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 5.14e-01 85.2% 100.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.09e-01 87.7% 87.8%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 5.20e-01 87.7% 100.0%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 45.0 4.38e-01 85.2% 66.3%
2r19A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.63 43.0 3.64e-01 85.2% 42.2%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.03e-01 96.3% 75.0%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 52.0 4.51e-01 92.6% 60.6%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.62 53.0 5.13e-01 93.8% 98.9%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.76e-01 88.9% 85.5%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.85e-01 90.1% 98.5%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 45.0 3.64e-01 80.2% 68.2%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.60 34.0 4.24e-01 90.1% 97.9%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 44.0 3.63e-01 80.2% 83.7%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.58 34.0 2.96e-01 77.8% 39.0%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 43.0 3.53e-01 77.8% 66.4%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.83e-01 86.4% 88.9%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 49.0 3.93e-01 96.3% 89.0%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.55 47.0 4.17e-01 95.1% 82.1%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.54 47.0 3.18e-01 97.5% 96.1%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 39.0 2.54e-01 80.2% 17.1%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 45.0 3.04e-01 96.3% 91.5%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 41.0 4.27e-01 90.1% 100.0%
2e2dC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 40.0 3.88e-01 90.1% 81.9%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937692 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 58.0 6.35e-01 95.1% 95.4%
4024727 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 56.0 5.10e-01 93.8% 57.7%
4640818 3523.1.1.2 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.77 48.0 3.64e-01 84.0% 28.3%
4015654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 52.0 5.60e-01 92.6% 82.9%
3890091 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.75 52.0 5.30e-01 92.6% 73.8%
3617549 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.74 53.0 4.84e-01 92.6% 57.1%
3606398 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.74 44.0 5.18e-01 92.6% 87.3%
3705484 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.74 45.0 5.26e-01 93.8% 89.1%
409204 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.74 52.0 4.77e-01 92.6% 57.3%
3995481 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.73 52.0 4.86e-01 92.6% 60.0%
3598052 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.13e-01 92.6% 68.9%
3714926 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.73 42.0 5.22e-01 90.1% 94.0%
4876572 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.73 50.0 4.89e-01 91.4% 65.9%
3714918 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.72 44.0 5.13e-01 93.8% 89.1%
3606838 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 50.0 4.73e-01 92.6% 61.1%
4884271 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.72 50.0 5.24e-01 92.6% 80.6%
409205 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.72 50.0 4.98e-01 91.4% 69.4%
3506156 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.72 49.0 5.13e-01 92.6% 77.3%
5066515 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 50.0 5.44e-01 92.6% 89.2%
3593797 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.72 43.0 5.09e-01 93.8% 89.1%
4948069 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.09e-01 92.6% 78.7%
3730294 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.70 53.0 5.36e-01 91.4% 81.2%
5026934 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.69 48.0 4.84e-01 92.6% 72.5%
3168781 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.69 53.0 4.85e-01 92.6% 62.9%
3712189 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.69 52.0 5.03e-01 92.6% 72.2%
3473172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.35e-01 91.4% 83.7%
3270868 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.68 42.0 4.95e-01 92.6% 92.7%
4048813 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.68 43.0 5.05e-01 92.6% 94.5%
1549365 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.67 50.0 4.98e-01 92.6% 77.1%
3600188 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.67 41.0 4.72e-01 92.6% 89.1%
4016022 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.94e-01 92.6% 81.3%
4397252 3523.1.1.3 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptC 0.67 47.0 3.96e-01 85.2% 43.7%
4029204 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.67 46.0 4.62e-01 92.6% 69.4%
4010995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.29e-01 92.6% 88.0%
4024322 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.99e-01 92.6% 84.0%
4197308 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.66 48.0 3.73e-01 84.0% 35.4%
3088555 3523.1.1.2 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.66 41.0 3.36e-01 87.7% 33.6%
3593314 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.71e-01 91.4% 75.0%
3712122 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.66 46.0 4.61e-01 91.4% 70.6%
5075579 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.74e-01 91.4% 76.2%
3259841 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.50e-01 97.5% 100.0%
3691572 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.64 46.0 4.72e-01 92.6% 78.8%
3937006 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.39e-01 90.1% 98.7%
3480204 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 48.0 5.22e-01 91.4% 100.0%
3482677 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 48.0 5.09e-01 97.5% 94.3%
3546727 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 55.0 4.98e-01 96.3% 73.1%
3231675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 46.0 4.91e-01 92.6% 92.9%
4494323 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.62 49.0 3.74e-01 85.2% 39.5%
3213828 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 52.0 4.71e-01 98.8% 70.9%
3502962 4.1.1.89 beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.60 45.0 4.61e-01 92.6% 82.5%
2464332 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.60 43.0 4.09e-01 86.4% 63.5%
3911248 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 48.0 4.64e-01 86.4% 94.4%
4932882 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 50.0 4.26e-01 92.6% 60.0%
3221732 4.1.1.89 beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.59 46.0 4.71e-01 92.6% 86.3%
3999692 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.59 37.0 2.80e-01 87.7% 26.2%
3022801 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 48.0 4.77e-01 97.5% 85.1%
3700518 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 50.0 4.34e-01 100.0% 80.0%
3597361 4.23.1.0 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.57 50.0 4.30e-01 100.0% 80.0%
3966386 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.56 40.0 3.42e-01 85.2% 44.3%
3715569 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 3.73e-01 100.0% 92.3%
5061502 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.43e-01 92.6% 51.3%
3879216 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.58e-01 92.6% 98.7%
3838939 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.53 39.0 2.49e-01 77.8% 24.1%
3387532 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.53 41.0 3.88e-01 90.1% 69.0%
3589333 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.91e-01 91.4% 72.6%
3276418 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.52 44.0 2.92e-01 95.1% 49.4%
3076049 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.50 42.0 2.93e-01 100.0% 90.9%