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NC_042029.1__YP_009613860.1__FDI58_gp10__00010

Bact-Vir

NC_042029.1__YP_009613860.1__FDI58_gp10__00010

Identity

Accession:
NC_042029 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eiauvirus› Edwardsiella_phage_eiAU

TaxID: 945083

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-119
PDB
Domain cluster: rep: LC778250.1__BES53409.1__X__00064__D20-111
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 41.0 4.86e-01 74.2% 93.8%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 46.0 4.40e-01 79.4% 85.2%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 44.0 4.06e-01 74.2% 95.1%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 44.0 4.03e-01 74.2% 81.6%
3ek7A01 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.61 42.0 3.19e-01 72.2% 74.5%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.60 44.0 3.30e-01 78.4% 81.3%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 4.20e-01 89.7% 71.8%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 47.0 4.13e-01 84.5% 88.5%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 45.0 2.85e-01 79.4% 19.0%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.59 39.0 4.33e-01 89.7% 85.9%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.31e-01 87.6% 70.4%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 42.0 4.13e-01 76.3% 99.0%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 41.0 3.84e-01 74.2% 99.2%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.55 36.0 3.05e-01 71.1% 41.0%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.55 40.0 3.66e-01 76.3% 88.9%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.54 41.0 3.95e-01 92.8% 69.6%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.79e-01 80.4% 100.0%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 38.0 3.33e-01 73.2% 95.1%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 45.0 3.56e-01 92.8% 53.6%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.86e-01 86.6% 71.4%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.93e-01 87.6% 69.6%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.98e-01 100.0% 70.8%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.52 46.0 3.89e-01 99.0% 75.6%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.98e-01 91.8% 69.0%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 2.99e-01 100.0% 81.9%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.52 45.0 4.22e-01 100.0% 80.8%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 3.94e-01 90.7% 72.4%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.70e-01 91.8% 59.7%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.78e-01 100.0% 68.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935161 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 45.0 4.45e-01 80.4% 68.6%
3534592 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 35.0 4.36e-01 71.1% 94.5%
3480718 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.62 43.0 2.82e-01 79.4% 17.1%
3580851 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.61 53.0 4.15e-01 93.8% 45.5%
3691754 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 44.0 3.47e-01 75.3% 71.0%
3212332 243.1.1.85 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.61 49.0 4.49e-01 87.6% 73.8%
5040130 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 42.0 4.32e-01 71.1% 92.2%
3764436 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.60 44.0 3.59e-01 76.3% 56.0%
3447011 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.59 43.0 3.70e-01 85.6% 46.1%
3496336 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.32e-01 95.9% 75.5%
3653384 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.59 54.0 4.60e-01 100.0% 91.0%
3808162 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 38.0 3.97e-01 80.4% 71.1%
3515333 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 42.0 4.35e-01 78.4% 81.1%
3832952 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.58 53.0 4.47e-01 99.0% 89.4%
3806226 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.58 52.0 4.42e-01 100.0% 89.4%
4126991 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 40.0 4.17e-01 84.5% 77.8%
3519929 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.57 45.0 4.10e-01 90.7% 63.8%
3425790 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.56 44.0 4.52e-01 85.6% 85.3%
4019136 708.1.1.10 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › SWI-SNF_Ssr4_N 0.56 51.0 4.14e-01 100.0% 70.6%
3703427 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 50.0 4.70e-01 99.0% 97.5%
1388524 243.17.1.1 ↗ a+b two layers › Cystatin-like › C-terminal domain of PatG › C-terminal domain of PatG › PatG_C 0.56 42.0 3.79e-01 85.6% 59.2%
3669361 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 50.0 4.16e-01 100.0% 90.6%
3930653 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.55 37.0 3.83e-01 79.4% 74.4%
3433417 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.54 39.0 3.80e-01 87.6% 68.6%
1108903 3667.1.1.1 ↗ a+b two layers › LEE-encoded effector EspG C-terminal domain-related › LEE-encoded effector EspG C-terminal domain-related › LEE-encoded effector EspG C-terminal domain-related › EspG 0.54 48.0 3.60e-01 100.0% 96.0%
3773175 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.53 40.0 3.25e-01 79.4% 47.6%
3622962 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.53 42.0 3.11e-01 85.6% 44.7%
3748213 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.53 42.0 3.04e-01 85.6% 36.4%
3663259 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 48.0 4.29e-01 100.0% 79.3%
3828738 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.53 42.0 3.70e-01 89.7% 60.0%
3961157 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 42.0 3.96e-01 89.7% 70.8%
3971296 243.1.1.5 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 0.52 41.0 3.80e-01 85.6% 65.1%
5037261 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 47.0 4.05e-01 100.0% 63.9%
3996943 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 47.0 4.08e-01 97.9% 82.1%
3833801 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 33.0 3.60e-01 82.5% 80.0%
3731118 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 39.0 3.01e-01 82.5% 52.4%
3192104 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.51 42.0 3.84e-01 88.7% 100.0%
3715923 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.50 45.0 2.95e-01 99.0% 39.3%
3583745 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.41e-01 82.5% 85.5%
3977502 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.50 40.0 3.72e-01 89.7% 71.5%