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NC_042032.1__YP_009614215.1__FDI61_gp097__00097

Bact-Vir

NC_042032.1__YP_009614215.1__FDI61_gp097__00097

Identity

Accession:
NC_042032 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Marvinvirus› Mycobacterium_phage_Marvin

TaxID: 1034139

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-61
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.75 55.0 5.54e-01 93.1% 78.9%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 51.0 4.70e-01 89.7% 59.5%
1vq8300 3.10.450.80 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 52.0 4.47e-01 82.8% 84.8%
5yy8A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.67 45.0 2.88e-01 100.0% 14.7%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 47.0 4.65e-01 100.0% 69.8%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 59.0 5.41e-01 100.0% 77.6%
6gmhI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 56.0 5.28e-01 100.0% 88.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.62 43.0 4.64e-01 72.4% 89.6%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.61 43.0 2.74e-01 100.0% 14.9%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 38.0 3.46e-01 82.8% 46.9%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.75e-01 94.8% 58.4%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 46.0 3.66e-01 100.0% 87.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.76e-01 96.6% 61.3%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 3.61e-01 100.0% 42.9%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.75e-01 96.6% 69.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.03e-01 96.6% 72.2%
5zg8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 44.0 2.83e-01 100.0% 26.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.97e-01 93.1% 82.3%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.52 39.0 4.09e-01 91.4% 94.1%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.50 37.0 3.04e-01 86.2% 83.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038934 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.78 58.0 5.81e-01 93.1% 79.3%
3705742 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.77 57.0 5.78e-01 94.8% 79.3%
3755722 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.76 56.0 3.94e-01 94.8% 26.3%
5048721 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.73 54.0 5.23e-01 91.4% 70.8%
5054449 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.69 61.0 5.72e-01 98.3% 81.2%
345409 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.67 60.0 5.52e-01 100.0% 80.8%
3546293 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.66 44.0 2.77e-01 100.0% 12.8%
3354564 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 54.0 5.36e-01 100.0% 90.0%
4014828 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.94e-01 98.3% 85.5%
3190757 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.65 50.0 4.96e-01 100.0% 81.7%
4945758 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 58.0 5.43e-01 100.0% 90.0%
4028728 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.63 46.0 4.74e-01 91.4% 83.6%
4485357 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.62 55.0 5.42e-01 100.0% 95.2%
3929525 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 49.0 5.17e-01 89.7% 100.0%
3589900 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 48.0 4.29e-01 100.0% 61.2%
4987033 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 48.0 3.99e-01 100.0% 49.5%
3223140 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 45.0 3.62e-01 100.0% 40.8%
4943539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 40.0 4.46e-01 70.7% 95.3%
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 41.0 3.62e-01 96.6% 49.5%
3266046 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 45.0 4.47e-01 98.3% 88.3%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.56 42.0 3.99e-01 87.9% 67.1%
3972748 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 39.0 3.71e-01 100.0% 61.4%
3592332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 31.0 2.61e-01 100.0% 28.6%
3550110 375.10.1.3 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 0.55 43.0 3.96e-01 86.2% 66.7%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 3.99e-01 94.8% 75.0%
3924975 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.54 40.0 3.68e-01 93.1% 60.0%
3608562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 2.99e-01 96.6% 30.2%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 40.0 3.97e-01 94.8% 80.0%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.32e-01 94.8% 48.4%
3691622 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.66e-01 94.8% 64.0%
3806419 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 43.0 2.98e-01 96.6% 92.4%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.39e-01 91.4% 45.8%
3819521 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.52 38.0 3.93e-01 89.7% 85.5%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.66e-01 91.4% 72.9%