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NC_042033.1__YP_009614226.1__FDI62_gp01__00001

Bact-Vir

NC_042033.1__YP_009614226.1__FDI62_gp01__00001

Identity

Accession:
NC_042033 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Papyrusvirus› Mycobacterium_phage_Send513

TaxID: 1034146

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-143
PDB
Domain cluster: representative
D2 medium residues 146-240
PDB
Domain cluster: rep: OR159654.1__WKW85165.1__SEA_AIKOY__3__00003__D24-145
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 44.0 4.20e-01 76.8% 56.8%
3tufA00 1.10.287.4300 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like 0.67 37.0 3.48e-01 87.4% 44.3%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 38.0 3.68e-01 72.6% 59.0%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.58e-01 75.8% 67.9%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.56 37.0 3.99e-01 83.2% 78.3%
3rk6A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 40.0 3.09e-01 76.8% 69.6%
3ea5D00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 46.0 2.70e-01 100.0% 21.1%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.53 46.0 3.14e-01 95.8% 90.7%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 46.0 3.08e-01 100.0% 85.5%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.51 36.0 3.47e-01 95.8% 64.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4318541 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.70 46.0 4.52e-01 98.9% 61.9%
4232718 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.65 43.0 4.31e-01 100.0% 65.0%
4293733 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.64 43.0 4.18e-01 98.9% 61.9%
4129436 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.61 41.0 4.03e-01 100.0% 62.9%
3216699 5001.1.1.63 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab 0.60 44.0 3.09e-01 77.9% 46.0%
3518386 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.59 35.0 3.81e-01 85.3% 72.0%
3641319 621.1.1.1 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C 0.59 49.0 4.11e-01 92.6% 83.6%
3684830 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.58 42.0 4.23e-01 88.4% 74.0%
3457831 3711.1.1.4 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.58 41.0 3.22e-01 74.7% 35.7%
3274487 605.1.1.155 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.58 41.0 3.33e-01 73.7% 77.1%
4625331 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.57 44.0 3.42e-01 82.1% 49.0%
5029560 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.57 33.0 2.40e-01 72.6% 18.3%
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.57 41.0 3.72e-01 85.3% 54.8%
3618 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.56 37.0 4.01e-01 83.2% 79.3%
3394861 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.56 41.0 3.29e-01 77.9% 70.8%
3384197 101.1.17.40 ↗ alpha arrays › HTH › HTH › FF domain › FF, FF_PRPF40A 0.56 42.0 4.05e-01 81.1% 80.9%
4682501 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.55 41.0 4.10e-01 87.4% 78.0%
4673395 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.55 47.0 3.44e-01 95.8% 60.4%
3643155 603.1.1.2 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Not3 0.54 39.0 3.67e-01 77.9% 97.5%
3611776 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 36.0 3.16e-01 93.7% 46.4%
59950 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 2.70e-01 100.0% 21.1%
4184330 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.52 38.0 3.83e-01 87.4% 77.0%
3169453 109.4.1.1456 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, HEAT_IPO9_c 0.52 45.0 2.62e-01 100.0% 21.3%
3192789 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 46.0 3.10e-01 97.9% 66.5%
4643578 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.52 35.0 3.32e-01 71.6% 95.2%
4579 109.4.1.1345 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, IBN_N, HEAT_EZ, TPR_IMB1 0.51 43.0 2.59e-01 100.0% 93.5%
3478703 192.29.1.24 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM237 0.51 37.0 3.02e-01 78.9% 45.6%