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NC_042033.1__YP_009614284.1__FDI62_gp59__00059

Bact-Vir

NC_042033.1__YP_009614284.1__FDI62_gp59__00059

Identity

Accession:
NC_042033 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Papyrusvirus› Mycobacterium_phage_Send513

TaxID: 1034146

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-148
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 39.0 4.05e-01 78.8% 56.0%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 44.0 3.62e-01 94.9% 40.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 33.0 3.78e-01 72.7% 76.1%
2dchX01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 42.0 4.34e-01 92.9% 78.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 32.0 3.76e-01 72.7% 80.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.57 33.0 3.79e-01 74.7% 78.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 29.0 3.50e-01 76.8% 78.0%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 29.0 3.89e-01 76.8% 98.0%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 32.0 3.76e-01 78.8% 83.3%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 41.0 2.83e-01 78.8% 72.9%
3brcA02 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.55 38.0 3.60e-01 71.7% 98.3%
3ke3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 36.0 3.55e-01 76.8% 60.7%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 35.0 3.83e-01 94.9% 79.3%
3itwA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 26.0 3.21e-01 81.8% 75.0%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 34.0 2.96e-01 77.8% 40.9%
3r1kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.79e-01 87.9% 100.0%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 44.0 4.04e-01 93.9% 98.5%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 37.0 3.46e-01 100.0% 57.8%
3jcuB02 3.10.680.10 Alpha Beta › Roll › Photosystem II CP47 reaction center protein › Photosystem II CP47 reaction center protein 0.51 37.0 3.12e-01 80.8% 44.5%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 3.81e-01 77.8% 88.0%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.50 31.0 3.11e-01 75.8% 60.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.69 38.0 3.77e-01 78.8% 50.5%
7726 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.68 35.0 4.44e-01 74.7% 84.5%
4188237 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.66 33.0 4.29e-01 77.8% 87.3%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.64 43.0 4.81e-01 78.8% 87.3%
4004760 64.1.1.5 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF333 0.64 28.0 3.76e-01 72.7% 84.4%
4992480 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 41.0 4.24e-01 100.0% 73.3%
3436557 220.4.1.8 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.62 41.0 4.67e-01 78.8% 90.7%
3602264 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.60 40.0 4.22e-01 100.0% 77.6%
4997605 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 39.0 3.96e-01 100.0% 66.0%
4345436 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.60 34.0 3.92e-01 83.8% 76.0%
4206920 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.58 34.0 3.76e-01 78.8% 73.3%
4243634 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.58 35.0 3.94e-01 84.8% 78.7%
3284714 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.58 34.0 4.17e-01 91.9% 92.1%
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 37.0 3.99e-01 81.8% 78.8%
3602142 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.58 44.0 4.37e-01 92.9% 77.1%
5029357 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.57 45.0 4.28e-01 94.9% 72.2%
3391098 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.57 43.0 3.64e-01 78.8% 91.9%
5013284 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.57 39.0 4.29e-01 84.8% 93.3%
4075546 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.57 44.0 4.58e-01 94.9% 92.2%
4934172 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 37.0 4.27e-01 85.9% 95.7%
3282322 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 43.0 4.09e-01 94.9% 71.3%
4669669 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 42.0 4.15e-01 99.0% 75.5%
3165990 310.3.1.22 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27480, PF30181 0.54 42.0 4.01e-01 82.8% 89.6%
5009651 304.165.1.0 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 0.54 41.0 3.49e-01 83.8% 49.4%
3451456 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.54 34.0 3.48e-01 75.8% 65.3%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 32.0 3.84e-01 76.8% 95.2%
5075159 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 45.0 3.83e-01 93.9% 98.8%
3817811 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 33.0 3.50e-01 79.8% 71.8%
3942499 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 31.0 3.48e-01 78.8% 81.4%
4962382 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 40.0 3.92e-01 94.9% 78.2%