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NC_042043.1__YP_009615444.1__FDI72_gp42__00042
Bact-VirNC_042043.1__YP_009615444.1__FDI72_gp42__00042
Identity
- Accession:
- NC_042043 ↗
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Taxonomy
TaxID: 2496545
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.86 | 76.0 | 5.35e-01 | 100.0% | 33.7% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.83 | 58.0 | 4.57e-01 | 84.1% | 37.1% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.80 | 70.0 | 6.39e-01 | 100.0% | 74.4% |
| 4wpeA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 70.0 | 4.53e-01 | 100.0% | 24.7% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.78 | 62.0 | 3.74e-01 | 85.7% | 24.8% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.78 | 53.0 | 4.11e-01 | 79.4% | 33.8% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.78 | 57.0 | 4.34e-01 | 87.3% | 34.5% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 69.0 | 5.88e-01 | 100.0% | 66.7% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 68.0 | 5.17e-01 | 100.0% | 44.9% |
| 2h7oA01 | 1.20.120.1330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain | 0.76 | 58.0 | 4.58e-01 | 81.0% | 75.6% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.76 | 68.0 | 4.69e-01 | 100.0% | 32.9% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.75 | 66.0 | 5.91e-01 | 100.0% | 71.1% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.74 | 57.0 | 5.49e-01 | 85.7% | 74.3% |
| 3ehfB01 | 6.10.250.2870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 60.0 | 5.09e-01 | 88.9% | 71.2% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 53.0 | 5.48e-01 | 77.8% | 89.7% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 63.0 | 5.25e-01 | 93.7% | 58.7% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.72 | 49.0 | 5.34e-01 | 76.2% | 86.5% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 54.0 | 5.40e-01 | 85.7% | 78.5% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.71 | 53.0 | 4.32e-01 | 79.4% | 96.5% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.70 | 57.0 | 3.60e-01 | 87.3% | 50.8% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 60.0 | 5.57e-01 | 96.8% | 79.0% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 47.0 | 4.47e-01 | 74.6% | 57.7% |
| 1hqoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 54.0 | 4.27e-01 | 85.7% | 44.3% |
| 1upkA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.68 | 46.0 | 2.90e-01 | 73.0% | 14.1% |
| 1o7dC01 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.68 | 50.0 | 5.09e-01 | 79.4% | 88.5% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.66 | 47.0 | 3.68e-01 | 81.0% | 32.2% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.66 | 53.0 | 5.02e-01 | 95.2% | 75.0% |
| 2ouwB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.64 | 47.0 | 3.60e-01 | 77.8% | 39.7% |
| 1fx8A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.63 | 51.0 | 3.50e-01 | 95.2% | 76.0% |
| 3gs3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.61 | 43.0 | 2.95e-01 | 77.8% | 45.0% |
| 3triA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.53 | 45.0 | 3.94e-01 | 100.0% | 97.1% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.53 | 40.0 | 3.13e-01 | 85.7% | 43.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3671313 | 109.26.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › ELYS | 0.89 | 65.0 | 4.08e-01 | 79.4% | 17.1% |
| 3281023 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.82 | 66.0 | 4.95e-01 | 93.7% | 36.7% |
| 3184698 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.82 | 70.0 | 6.15e-01 | 92.1% | 68.9% |
| 4936733 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.81 | 74.0 | 5.89e-01 | 100.0% | 81.7% |
| 3739245 | 4177.1.1.14 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_2 | 0.79 | 72.0 | 4.87e-01 | 100.0% | 29.8% |
| 5056100 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.79 | 67.0 | 6.36e-01 | 93.7% | 80.0% |
| 4882209 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.79 | 63.0 | 5.68e-01 | 85.7% | 63.5% |
| 8997 | 2002.3.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 | 0.78 | 62.0 | 3.74e-01 | 85.7% | 24.8% |
| 3930829 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.78 | 66.0 | 6.26e-01 | 93.7% | 80.0% |
| 3386456 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.77 | 59.0 | 5.46e-01 | 87.3% | 65.0% |
| 4826095 | 5067.1.1.5 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing | 0.77 | 58.0 | 5.08e-01 | 81.0% | 62.4% |
| 4303085 | 3755.3.1.467 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C | 0.76 | 60.0 | 4.85e-01 | 85.7% | 48.3% |
| 3498152 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.74 | 66.0 | 4.66e-01 | 100.0% | 33.2% |
| 4011229 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.73 | 53.0 | 4.76e-01 | 84.1% | 55.6% |
| 3454208 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.72 | 52.0 | 4.81e-01 | 81.0% | 60.0% |
| 3541263 | 604.1.1.227 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27002 | 0.71 | 60.0 | 4.68e-01 | 98.4% | 44.1% |
| 3503536 | 3711.1.1.38 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Patched | 0.70 | 56.0 | 5.01e-01 | 88.9% | 62.2% |
| 4884522 | 304.28.1.17 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sterol-sensing | 0.68 | 53.0 | 4.02e-01 | 87.3% | 35.0% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.68 | 56.0 | 5.22e-01 | 98.4% | 72.9% |
| 3645050 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 44.0 | 3.06e-01 | 90.5% | 20.4% |