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NC_042043.1__YP_009615448.1__FDI72_gp46__00046
Bact-VirNC_042043.1__YP_009615448.1__FDI72_gp46__00046
Identity
- Accession:
- NC_042043 ↗
- Kingdom:
- phage
Quality
72.4
mean pLDDT
Taxonomy
TaxID: 2496545
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-71
D2
high
residues 75-147
Domain cluster:
rep: MK095606.1__AZS06397.1__AAS23_gp84__00084__D99-198
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5zr4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 46.0 | 4.06e-01 | 94.5% | 43.1% |
| 1bi0A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.77 | 45.0 | 4.72e-01 | 93.2% | 65.2% |
| 2cs1A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.72 | 47.0 | 4.33e-01 | 80.8% | 52.2% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.71 | 45.0 | 5.06e-01 | 79.5% | 88.7% |
| 3emlA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.64 | 51.0 | 3.43e-01 | 87.7% | 62.5% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 49.0 | 4.73e-01 | 100.0% | 72.9% |
| 1wtjB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.63 | 56.0 | 5.00e-01 | 94.5% | 88.7% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 42.0 | 4.63e-01 | 98.6% | 86.2% |
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.61 | 54.0 | 4.45e-01 | 100.0% | 54.6% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 53.0 | 4.21e-01 | 100.0% | 86.5% |
| 3vs8H00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.59 | 51.0 | 3.26e-01 | 100.0% | 64.1% |
| 3iv7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.58 | 47.0 | 3.54e-01 | 91.8% | 64.3% |
| 4q2cA01 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.57 | 49.0 | 3.35e-01 | 100.0% | 26.6% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.57 | 49.0 | 4.02e-01 | 94.5% | 72.3% |
| 3c02A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.55 | 42.0 | 2.99e-01 | 83.6% | 66.5% |
| 1ynbA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 49.0 | 3.75e-01 | 100.0% | 67.1% |
| 7y9hB01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 44.0 | 2.89e-01 | 89.0% | 84.0% |
| 1n5uA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 47.0 | 4.22e-01 | 100.0% | 78.6% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 44.0 | 4.00e-01 | 100.0% | 83.0% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951198 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.84 | 49.0 | 4.08e-01 | 94.5% | 36.7% |
| 4942421 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.83 | 49.0 | 4.14e-01 | 94.5% | 38.3% |
| 4946879 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.83 | 49.0 | 3.94e-01 | 94.5% | 33.8% |
| 3603679 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.81 | 50.0 | 4.12e-01 | 97.3% | 38.3% |
| 5001480 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.80 | 50.0 | 3.90e-01 | 95.9% | 32.9% |
| 5084071 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.80 | 49.0 | 3.89e-01 | 95.9% | 32.9% |
| 3291136 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.80 | 47.0 | 3.64e-01 | 94.5% | 29.3% |
| 3813815 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.79 | 44.0 | 4.87e-01 | 100.0% | 68.3% |
| 5078625 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.79 | 48.0 | 3.76e-01 | 97.3% | 31.7% |
| 4984675 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.79 | 47.0 | 3.90e-01 | 93.2% | 36.7% |
| 4963579 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.78 | 47.0 | 3.79e-01 | 94.5% | 33.3% |
| 5036922 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.78 | 49.0 | 3.96e-01 | 91.8% | 36.2% |
| 4985324 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.78 | 48.0 | 3.69e-01 | 95.9% | 29.7% |
| 3989244 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.78 | 48.0 | 4.68e-01 | 95.9% | 57.5% |
| 4993180 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.77 | 47.0 | 3.84e-01 | 94.5% | 34.6% |
| 5013300 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.77 | 49.0 | 3.78e-01 | 97.3% | 32.4% |
| 5042174 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.77 | 49.0 | 3.93e-01 | 93.2% | 35.6% |
| 4039721 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.77 | 47.0 | 3.80e-01 | 95.9% | 34.1% |
| 58403 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.76 | 46.0 | 5.19e-01 | 94.5% | 78.9% |
| 5052426 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.76 | 48.0 | 3.83e-01 | 95.9% | 34.8% |
| 5053927 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.74 | 47.0 | 3.71e-01 | 93.2% | 33.6% |
| 3336061 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.74 | 61.0 | 6.21e-01 | 100.0% | 94.3% |
| 4951422 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.72 | 53.0 | 4.74e-01 | 76.7% | 84.0% |
| 3793294 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 49.0 | 3.87e-01 | 89.0% | 35.9% |
| 3590527 | 4953.1.1.6 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF2512 | 0.65 | 46.0 | 4.02e-01 | 74.0% | 92.7% |
| 4980790 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.65 | 46.0 | 3.43e-01 | 75.3% | 76.4% |
| 3439292 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.63 | 51.0 | 3.76e-01 | 89.0% | 38.9% |
| 5039496 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.62 | 51.0 | 4.75e-01 | 100.0% | 71.1% |
| 5079301 | 3355.1.1.4 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DctM | 0.61 | 45.0 | 2.86e-01 | 79.5% | 48.4% |
| 5043111 | 3542.1.1.2 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP | 0.61 | 53.0 | 3.60e-01 | 93.2% | 50.4% |
| 4379388 | 2007.1.14.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase | 0.61 | 52.0 | 3.98e-01 | 93.2% | 71.2% |
| 5043797 | 3542.1.1.1 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin | 0.60 | 51.0 | 3.43e-01 | 93.2% | 47.6% |
| 3946006 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.60 | 51.0 | 3.61e-01 | 94.5% | 34.3% |
| 3663214 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 54.0 | 4.38e-01 | 100.0% | 60.0% |
| 2726576 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.60 | 47.0 | 4.49e-01 | 82.2% | 84.1% |
| 3341345 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.60 | 53.0 | 4.41e-01 | 100.0% | 62.3% |
| 5050879 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.59 | 47.0 | 3.74e-01 | 83.6% | 51.1% |
| 3215052 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.59 | 46.0 | 4.38e-01 | 100.0% | 71.8% |
| 4057016 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.59 | 50.0 | 3.28e-01 | 94.5% | 21.6% |
| 3947472 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.58 | 49.0 | 3.24e-01 | 94.5% | 21.7% |
| 3165263 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.58 | 54.0 | 3.33e-01 | 100.0% | 70.6% |
| 4009069 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.58 | 49.0 | 3.21e-01 | 94.5% | 21.9% |
| 3986900 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.58 | 49.0 | 3.21e-01 | 94.5% | 22.0% |
| None | — | 0.57 | 47.0 | 3.64e-01 | 86.3% | 45.5% | |
| 3953573 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.57 | 47.0 | 3.64e-01 | 86.3% | 45.5% |
| 5027224 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.56 | 48.0 | 3.41e-01 | 100.0% | 96.7% |
| 3946482 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.56 | 47.0 | 3.21e-01 | 94.5% | 25.9% |
| 3840020 | 5073.1.2.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain | 0.55 | 41.0 | 2.97e-01 | 83.6% | 83.8% |
| 4679957 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.55 | 47.0 | 3.41e-01 | 95.9% | 55.0% |
| 4657272 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.54 | 48.0 | 4.26e-01 | 100.0% | 86.7% |
| 3684763 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.53 | 39.0 | 2.34e-01 | 76.7% | 24.7% |
| 3291696 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.53 | 42.0 | 2.83e-01 | 98.6% | 20.6% |
| 5077984 | 5073.1.2.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain | 0.52 | 39.0 | 2.90e-01 | 84.9% | 44.2% |
| 3942163 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.51 | 45.0 | 2.97e-01 | 100.0% | 27.3% |
| 3174987 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.51 | 44.0 | 2.96e-01 | 100.0% | 46.8% |
| 5005996 | 187.1.1.0 ↗ | alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin | 0.51 | 45.0 | 4.35e-01 | 100.0% | 87.5% |