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NC_042043.1__YP_009615457.1__FDI72_gp55__00055

Bact-Vir

NC_042043.1__YP_009615457.1__FDI72_gp55__00055

Identity

Accession:
NC_042043 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Sertoctavirus› Escherichia_phage_SRT8

TaxID: 2496545

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-81
PDB
Domain cluster: rep: NC_042067.1__YP_009618328.1__FDI95_gp191__00269__D2-73
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 43.0 4.19e-01 100.0% 55.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 42.0 5.06e-01 100.0% 96.1%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 39.0 4.56e-01 100.0% 86.3%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 40.0 3.98e-01 100.0% 55.8%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 44.0 4.65e-01 100.0% 78.6%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 43.0 4.93e-01 100.0% 94.7%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 42.0 4.59e-01 100.0% 81.5%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 43.0 4.71e-01 100.0% 88.7%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 4.70e-01 100.0% 93.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 38.0 4.05e-01 100.0% 69.1%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 4.65e-01 100.0% 94.8%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 40.0 4.51e-01 100.0% 89.8%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 4.55e-01 100.0% 87.3%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 40.0 4.30e-01 100.0% 77.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.67e-01 100.0% 90.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.16e-01 100.0% 79.0%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 32.0 3.81e-01 98.8% 88.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 40.0 4.51e-01 100.0% 96.6%
2v0cA03 2.30.210.10 Mainly Beta › Roll › Leucyl-tRNA synthetase, domain 3 › Leucyl-tRNA synthetase, domain 3 0.60 32.0 3.73e-01 77.5% 73.7%
1r0vA02 3.40.1170.20 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain 0.58 36.0 3.72e-01 82.5% 66.7%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.76e-01 98.8% 86.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.66e-01 97.5% 81.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.66e-01 100.0% 82.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.91e-01 100.0% 84.6%
3263489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.86e-01 100.0% 83.1%
3535437 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 42.0 4.70e-01 100.0% 88.3%
3846069 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 42.0 4.56e-01 100.0% 81.5%
3911321 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 41.0 4.19e-01 100.0% 66.3%
3398298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 41.0 4.20e-01 98.8% 68.8%
3924337 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.62e-01 100.0% 91.7%
3655225 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 27.0 3.25e-01 95.0% 64.0%
279006 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 38.0 3.99e-01 100.0% 78.3%
3195040 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.53 41.0 3.42e-01 87.5% 98.1%
3505855 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.53 44.0 4.47e-01 95.0% 92.5%
2325573 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 37.0 2.97e-01 81.2% 74.7%
D2 high residues 86-159
PDB
Domain cluster: rep: NC_042067.1__YP_009618328.1__FDI95_gp191__00269__D2-73
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 4.98e-01 100.0% 89.1%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 48.0 4.43e-01 98.6% 62.4%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 5.10e-01 98.6% 98.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.95e-01 100.0% 96.5%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 3.88e-01 100.0% 46.2%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 3.73e-01 100.0% 41.8%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 4.99e-01 100.0% 96.7%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.43e-01 100.0% 84.7%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 44.0 4.36e-01 100.0% 70.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 3.91e-01 100.0% 48.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 4.67e-01 100.0% 82.9%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 44.0 4.65e-01 100.0% 86.2%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.84e-01 100.0% 96.7%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 39.0 4.18e-01 97.3% 75.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.79e-01 100.0% 92.4%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.47e-01 100.0% 82.4%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.64e-01 98.6% 100.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.60e-01 100.0% 96.6%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 48.0 3.97e-01 90.5% 82.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.75e-01 100.0% 93.9%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 43.0 4.62e-01 100.0% 95.2%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 42.0 4.58e-01 100.0% 98.3%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.59e-01 100.0% 100.0%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.43e-01 100.0% 96.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.59e-01 100.0% 95.3%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.60e-01 100.0% 95.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.94e-01 100.0% 66.3%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.44e-01 100.0% 92.1%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.31e-01 100.0% 93.3%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.51e-01 100.0% 94.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 3.88e-01 100.0% 79.0%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.64e-01 89.2% 92.3%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.59e-01 98.6% 98.5%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 4.20e-01 95.9% 100.0%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.53e-01 93.2% 89.3%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 4.06e-01 100.0% 83.3%
1b33N01 3.30.1490.170 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) 0.52 33.0 3.65e-01 100.0% 85.5%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.51 44.0 4.13e-01 100.0% 82.1%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 43.0 3.76e-01 100.0% 93.5%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.76e-01 93.2% 85.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3579483 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.65 56.0 5.44e-01 97.3% 100.0%
158943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 47.0 4.65e-01 100.0% 72.2%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 46.0 4.69e-01 100.0% 80.0%
194032 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 46.0 4.54e-01 100.0% 71.2%
3535437 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 45.0 4.91e-01 100.0% 93.3%
3801719 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 45.0 4.66e-01 100.0% 81.4%
3511277 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.56e-01 100.0% 73.8%
3476188 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 46.0 4.60e-01 100.0% 77.3%
3625911 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 45.0 4.78e-01 100.0% 89.2%
3234947 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 45.0 4.77e-01 100.0% 89.2%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.62 43.0 4.34e-01 100.0% 72.0%
3179932 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 46.0 4.61e-01 100.0% 78.7%
3490689 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 44.0 4.57e-01 100.0% 81.4%
146236 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 44.0 3.91e-01 100.0% 51.9%
3926701 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 44.0 4.55e-01 100.0% 83.8%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 45.0 4.50e-01 100.0% 77.3%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 45.0 4.51e-01 100.0% 78.7%
3843554 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 44.0 4.53e-01 100.0% 82.9%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.66e-01 98.6% 95.0%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.66e-01 100.0% 95.0%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 42.0 4.61e-01 98.6% 100.0%
4021478 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.19e-01 100.0% 68.2%
4019215 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.60 43.0 4.47e-01 100.0% 82.9%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.45e-01 100.0% 90.0%
3879172 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 44.0 4.60e-01 100.0% 92.3%
3591824 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 44.0 4.54e-01 100.0% 85.7%
3640801 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.59 43.0 4.25e-01 100.0% 75.0%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.58 46.0 4.18e-01 100.0% 63.6%
3698582 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 44.0 4.48e-01 100.0% 85.7%
3629145 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 43.0 4.50e-01 100.0% 90.8%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.77e-01 100.0% 98.5%
3191269 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 44.0 4.51e-01 100.0% 87.1%
3253768 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.58 44.0 4.49e-01 100.0% 85.7%
2831853 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.58 45.0 3.56e-01 100.0% 39.6%
3402950 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.58 41.0 2.61e-01 100.0% 12.7%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 39.0 4.13e-01 100.0% 85.9%
3470815 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 43.0 4.39e-01 100.0% 88.6%
4483125 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.55 45.0 3.18e-01 100.0% 27.8%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.55 39.0 4.08e-01 100.0% 86.2%
3225762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 41.0 4.09e-01 100.0% 81.3%
3763497 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 42.0 4.25e-01 100.0% 86.7%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 43.0 4.34e-01 100.0% 89.3%
4437258 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.53 46.0 4.04e-01 100.0% 66.1%
3808601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 46.0 4.44e-01 100.0% 88.2%
3953882 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 43.0 3.60e-01 93.2% 92.3%
3486458 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 38.0 2.84e-01 83.8% 74.1%