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NC_042047.1__YP_009615997.1__FDI76_gp087__00087

Bact-Vir

NC_042047.1__YP_009615997.1__FDI76_gp087__00087

Identity

Accession:
NC_042047 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-117
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xviA02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.76 46.0 4.07e-01 98.5% 43.6%
3euhD01 1.10.10.2250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 46.0 4.59e-01 95.5% 67.1%
3sqnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.71e-01 92.5% 75.4%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.68 59.0 4.95e-01 98.5% 79.8%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.66 45.0 4.03e-01 98.5% 51.1%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 43.0 3.93e-01 97.0% 49.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 49.0 3.69e-01 82.1% 95.8%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 38.0 3.97e-01 98.5% 62.9%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 52.0 4.29e-01 98.5% 49.2%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 48.0 3.76e-01 98.5% 37.5%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 44.0 4.21e-01 98.5% 60.5%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 42.0 3.88e-01 97.0% 51.7%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 40.0 3.94e-01 100.0% 57.3%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.63 45.0 3.40e-01 98.5% 29.8%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.63 44.0 4.36e-01 100.0% 68.6%
2l04A00 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 40.0 3.67e-01 100.0% 49.5%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.61 43.0 4.28e-01 76.1% 94.4%
3qz0A00 6.10.250.2300 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 53.0 5.01e-01 97.0% 97.4%
1tuaA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 46.0 4.02e-01 98.5% 54.3%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.06e-01 92.5% 68.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.25e-01 94.0% 70.4%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 45.0 4.13e-01 98.5% 63.6%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 4.19e-01 98.5% 67.9%
1wqsA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 36.0 3.57e-01 100.0% 58.6%
2wp3T00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.44e-01 100.0% 48.5%
2lycA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.56 39.0 3.28e-01 98.5% 39.2%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.56e-01 97.0% 55.6%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.46e-01 94.0% 49.5%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.80e-01 97.0% 65.9%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.54 48.0 4.20e-01 98.5% 75.8%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.68e-01 98.5% 61.1%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 42.0 3.79e-01 86.6% 97.9%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 3.88e-01 100.0% 62.8%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 43.0 4.18e-01 91.0% 98.7%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 38.0 3.22e-01 79.1% 66.7%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 42.0 3.56e-01 91.0% 83.7%
1ejcA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.53 45.0 3.22e-01 97.0% 34.1%
1ct9A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 38.0 2.80e-01 97.0% 27.1%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.52 44.0 3.90e-01 97.0% 97.1%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.68e-01 100.0% 67.9%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.38e-01 98.5% 58.8%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 3.15e-01 89.6% 98.8%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.45e-01 97.0% 59.3%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 42.0 3.67e-01 89.6% 73.7%
3f8kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.45e-01 92.5% 78.6%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.26e-01 97.0% 52.5%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.32e-01 100.0% 55.2%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.79e-01 98.5% 74.4%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.53e-01 92.5% 78.1%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.44e-01 95.5% 72.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036578 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.77 47.0 4.24e-01 98.5% 45.6%
5043133 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.70 47.0 3.93e-01 100.0% 41.8%
3590297 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 4.51e-01 98.5% 53.0%
5050501 3715.1.1.1 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.69 47.0 4.20e-01 95.5% 50.5%
3455192 320.1.1.11 a+b two layers › R3H domain-like › R3H domain › R3H domain › PF27261 0.67 41.0 4.00e-01 97.0% 54.7%
3588428 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.67 48.0 4.82e-01 97.0% 74.3%
4980798 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.67 51.0 4.92e-01 92.5% 73.3%
3706636 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.66 44.0 4.17e-01 98.5% 57.5%
4614032 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.66 49.0 4.64e-01 95.5% 66.3%
4022173 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.66 44.0 4.47e-01 100.0% 70.8%
3586847 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.66 48.0 4.58e-01 97.0% 66.3%
3989153 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 4.41e-01 92.5% 65.3%
3579956 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.65 46.0 4.61e-01 98.5% 72.9%
4465068 140.1.1.14 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.64 43.0 3.03e-01 71.6% 21.9%
3182652 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 45.0 4.31e-01 100.0% 63.7%
4605419 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.63 50.0 4.72e-01 98.5% 72.5%
5003975 101.1.2.944 alpha arrays › HTH › HTH › winged helix domain › PF26486 0.63 45.0 4.55e-01 98.5% 80.0%
3686892 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 47.0 4.41e-01 95.5% 64.7%
4954889 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.61 47.0 4.79e-01 97.0% 87.7%
3731436 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 43.0 3.32e-01 73.1% 68.0%
3537874 320.4.1.5 a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C 0.61 56.0 3.83e-01 100.0% 89.8%
3624413 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.60 43.0 4.37e-01 95.5% 76.9%
5034952 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.60 48.0 3.24e-01 89.6% 56.6%
5074512 3715.1.1.0 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.60 42.0 3.75e-01 100.0% 50.0%
3625878 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.60 44.0 3.97e-01 95.5% 55.0%
5074515 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.59 52.0 4.71e-01 98.5% 85.6%
3600265 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.59 52.0 4.32e-01 98.5% 60.0%
4826122 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 52.0 4.19e-01 98.5% 71.3%
3890741 320.1.1.7 a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.58 44.0 4.19e-01 100.0% 68.8%
3519165 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.14e-01 95.5% 68.2%
4965014 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 4.10e-01 94.0% 75.7%
4012162 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.40e-01 95.5% 34.7%
4996212 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.57 45.0 3.15e-01 89.6% 62.9%
4295057 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.56 43.0 3.00e-01 88.1% 83.3%
1186663 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.56 47.0 3.29e-01 98.5% 36.9%
3929188 140.1.1.14 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.56 50.0 3.29e-01 100.0% 65.7%
5046227 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.85e-01 92.5% 63.5%
5077205 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.01e-01 97.0% 64.2%
3701431 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.56 46.0 3.54e-01 97.0% 38.2%
5006082 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.43e-01 94.0% 96.6%
5043392 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.55 50.0 5.08e-01 98.5% 100.0%
5028855 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.01e-01 95.5% 69.4%
3941961 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.43e-01 100.0% 50.0%
3512685 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.54 43.0 3.52e-01 100.0% 44.6%
4264297 101.1.2.760 alpha arrays › HTH › HTH › winged helix domain › PF30824 0.54 45.0 3.73e-01 100.0% 97.8%
4506543 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.01e-01 97.0% 71.8%
4506359 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.54 41.0 3.88e-01 95.5% 69.4%
5579 306.8.1.1 a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp 0.53 42.0 3.79e-01 86.6% 97.9%
3807514 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.53 43.0 2.92e-01 92.5% 44.0%
4090279 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.53 42.0 3.92e-01 86.6% 74.1%
2075912 3012.1.1.2 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PMM 0.52 44.0 3.94e-01 97.0% 96.0%
3626537 3012.1.1.5 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › T6PP_C 0.52 46.0 4.07e-01 97.0% 96.8%
3594603 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 44.0 3.91e-01 97.0% 96.0%
3762392 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.52 43.0 3.10e-01 95.5% 45.2%
4360928 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.52 36.0 3.64e-01 97.0% 72.9%
3249558 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.52 45.0 4.24e-01 97.0% 98.8%
4180623 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.51 43.0 4.14e-01 97.0% 100.0%
4996616 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 4.00e-01 97.0% 98.3%
3951206 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.51 44.0 4.17e-01 98.5% 96.2%
5017587 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.37e-01 97.0% 60.0%
4006944 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.51 45.0 4.02e-01 98.5% 96.8%
3782093 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.51 44.0 4.07e-01 98.5% 100.0%
5009280 304.7.1.3 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Pro-kuma_activ 0.50 43.0 3.49e-01 95.5% 50.8%
1432936 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.50 36.0 3.16e-01 100.0% 50.0%
4813312 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 41.0 3.11e-01 100.0% 37.6%