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NC_042047.1__YP_009616037.1__FDI76_gp159__00127

Bact-Vir

NC_042047.1__YP_009616037.1__FDI76_gp159__00127

Identity

Accession:
NC_042047 ↗
Kingdom:
phage

Quality

94.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ritA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.72 56.0 3.70e-01 87.3% 25.0%
1ohcA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 44.0 3.20e-01 96.4% 69.8%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 42.0 3.18e-01 98.2% 83.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028156 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 45.0 3.86e-01 100.0% 66.7%
5036474 375.12.1.1 few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related › NAPRTase_C 0.52 45.0 3.80e-01 100.0% 70.5%
D2 high residues 64-141
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.71 43.0 3.58e-01 73.1% 35.6%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 43.0 4.71e-01 89.7% 79.0%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 42.0 4.27e-01 100.0% 64.6%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 44.0 4.10e-01 100.0% 54.5%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 44.0 3.92e-01 100.0% 47.8%
1p7hL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 51.0 4.66e-01 100.0% 63.6%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 39.0 3.48e-01 93.6% 44.3%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 49.0 4.75e-01 97.4% 75.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 46.0 4.15e-01 89.7% 56.9%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.62 46.0 3.57e-01 79.5% 78.0%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.61 44.0 4.16e-01 100.0% 63.2%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 48.0 3.95e-01 100.0% 47.9%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.60 44.0 4.06e-01 100.0% 60.4%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 42.0 3.51e-01 100.0% 41.8%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.58 47.0 4.62e-01 89.7% 95.2%
3b7yA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 46.0 3.79e-01 100.0% 47.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.25e-01 100.0% 65.1%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.57 40.0 3.75e-01 100.0% 57.4%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.97e-01 100.0% 61.0%
5jtwA02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.57 38.0 3.54e-01 80.8% 54.0%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.95e-01 100.0% 63.3%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 42.0 3.54e-01 100.0% 45.7%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 49.0 4.24e-01 100.0% 66.7%
6usmB01 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.56 45.0 3.67e-01 87.2% 84.4%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.56 50.0 3.88e-01 100.0% 57.0%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 4.02e-01 100.0% 81.9%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.55 46.0 3.84e-01 100.0% 50.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 44.0 3.54e-01 98.7% 41.9%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 36.0 3.08e-01 93.6% 40.3%
1iuhA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.55 47.0 3.69e-01 100.0% 96.7%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 40.0 3.56e-01 80.8% 64.2%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 41.0 3.34e-01 79.5% 84.6%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.80e-01 100.0% 64.2%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.07e-01 88.5% 85.7%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.54 44.0 3.21e-01 94.9% 31.5%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.17e-01 100.0% 70.5%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 37.0 2.89e-01 76.9% 32.2%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 39.0 3.23e-01 78.2% 76.9%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.91e-01 100.0% 65.4%
8alzB04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 40.0 3.70e-01 100.0% 60.9%
2yocA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.14e-01 98.7% 70.4%
3hqiA01 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.53 39.0 3.34e-01 89.7% 46.7%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.92e-01 100.0% 66.7%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.04e-01 94.9% 73.5%
4dbrA02 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.51 35.0 2.51e-01 70.5% 45.5%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.51 44.0 3.62e-01 100.0% 52.3%
4jrfA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 3.47e-01 100.0% 64.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945229 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.77 43.0 3.67e-01 78.2% 35.8%
4944411 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 41.0 3.39e-01 76.9% 32.6%
4946284 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 39.0 3.32e-01 75.6% 33.6%
4948154 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 42.0 3.57e-01 75.6% 36.8%
5033080 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 49.0 4.65e-01 89.7% 61.1%
4959201 815.1.1.1 a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 0.67 44.0 4.12e-01 100.0% 54.7%
4927140 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 49.0 4.62e-01 91.0% 63.2%
4149973 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 48.0 4.38e-01 100.0% 58.0%
4944516 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 42.0 3.50e-01 74.4% 37.0%
3699303 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.67 41.0 3.39e-01 73.1% 35.6%
5075554 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 45.0 4.24e-01 100.0% 58.9%
4057352 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.65 45.0 3.15e-01 89.7% 22.0%
4355799 223.1.1.26 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.64 40.0 3.20e-01 76.9% 29.7%
4466175 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.64 47.0 3.60e-01 76.9% 79.4%
3218185 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 49.0 3.58e-01 88.5% 30.2%
3167876 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.63 43.0 3.24e-01 73.1% 31.4%
3942062 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 41.0 3.32e-01 73.1% 34.7%
5070409 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 41.0 4.03e-01 88.5% 61.4%
4947741 821.1.1.17 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 0.61 42.0 4.09e-01 88.5% 64.7%
3794250 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.61 44.0 3.62e-01 100.0% 41.4%
4515517 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.61 42.0 4.07e-01 88.5% 63.3%
3621110 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.61 43.0 4.06e-01 100.0% 60.0%
3280482 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.60 54.0 4.67e-01 100.0% 70.0%
3290047 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.60 44.0 3.29e-01 76.9% 64.6%
5072327 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 41.0 3.45e-01 74.4% 40.7%
4140256 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.60 44.0 3.35e-01 76.9% 72.2%
4380266 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 48.0 3.43e-01 87.2% 32.2%
3271015 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.60 42.0 3.40e-01 74.4% 52.0%
3959592 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 52.0 4.17e-01 97.4% 64.5%
4290748 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.59 43.0 3.23e-01 76.9% 62.0%
3928231 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.59 45.0 4.11e-01 100.0% 61.0%
3321854 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 46.0 3.91e-01 100.0% 50.8%
5039154 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 39.0 3.81e-01 100.0% 61.1%
4976020 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 42.0 3.48e-01 75.6% 90.7%
4998579 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 3.44e-01 87.2% 48.7%
3582019 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 4.02e-01 100.0% 65.3%
4962366 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.57 41.0 3.56e-01 100.0% 50.4%
3998968 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.57 46.0 3.78e-01 100.0% 48.3%
3876166 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.56 45.0 3.83e-01 100.0% 50.7%
5045833 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 39.0 3.64e-01 100.0% 56.2%
4938024 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.55 49.0 4.26e-01 100.0% 65.8%
4363048 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.55 47.0 4.08e-01 98.7% 75.4%
3065880 3019.1.1.4 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › GbpA_2 0.55 44.0 4.00e-01 89.7% 80.4%
3974768 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 39.0 3.19e-01 76.9% 83.9%
5059051 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 41.0 3.50e-01 100.0% 46.4%
4611376 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 37.0 2.38e-01 76.9% 14.0%
5049782 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.26e-01 75.6% 57.8%
3998052 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 44.0 3.90e-01 89.7% 90.4%
3581212 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 39.0 3.36e-01 76.9% 76.9%
3740347 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.54 47.0 3.76e-01 100.0% 63.6%
4280109 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.53 46.0 4.00e-01 98.7% 79.2%
3333290 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 47.0 3.61e-01 100.0% 54.4%
4105434 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.53 45.0 3.60e-01 100.0% 47.4%
5068930 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.53 42.0 3.40e-01 92.3% 43.4%
3240764 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 43.0 3.62e-01 89.7% 65.9%
5003530 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.52 44.0 3.69e-01 100.0% 52.9%
5065878 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.52 44.0 3.60e-01 100.0% 49.7%
3945615 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.52 44.0 3.58e-01 98.7% 49.3%
3420779 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 46.0 3.67e-01 100.0% 61.3%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 45.0 3.71e-01 100.0% 57.3%
4979666 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 38.0 3.36e-01 78.2% 88.7%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.52 45.0 3.29e-01 100.0% 86.1%
4064225 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.50 43.0 3.44e-01 100.0% 47.7%
5041351 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 36.0 3.25e-01 100.0% 51.7%