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NC_042051.1__YP_009616467.1__FDI80_gp42__00042

Bact-Vir

NC_042051.1__YP_009616467.1__FDI80_gp42__00042

Identity

Accession:
NC_042051 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Likavirus› Streptomyces_phage_Aaronocolus

TaxID: 1690426

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-70
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 47.0 3.39e-01 80.7% 35.2%
1g4uS01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.63 42.0 3.35e-01 70.2% 59.8%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 48.0 3.80e-01 87.7% 56.0%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 52.0 4.94e-01 100.0% 81.2%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.73e-01 100.0% 100.0%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.61 51.0 4.41e-01 94.7% 66.7%
3jcmN05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 45.0 4.51e-01 94.7% 86.0%
5ui5I04 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 50.0 4.89e-01 96.5% 85.7%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.62e-01 84.2% 97.8%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 49.0 4.45e-01 100.0% 87.7%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.25e-01 98.2% 78.0%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 42.0 3.46e-01 80.7% 80.4%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 48.0 3.63e-01 100.0% 37.3%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 33.0 3.01e-01 100.0% 39.8%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 41.0 4.17e-01 93.0% 100.0%
2wasA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 41.0 3.35e-01 93.0% 54.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044657 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 5.53e-01 100.0% 80.0%
4945040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 5.67e-01 98.2% 81.7%
4946654 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.68e-01 98.2% 83.3%
4927804 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 56.0 5.16e-01 100.0% 68.0%
3744196 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.70 54.0 5.62e-01 100.0% 98.0%
3946360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.44e-01 100.0% 78.5%
4008778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 56.0 5.70e-01 98.2% 92.7%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.68 55.0 4.85e-01 98.2% 60.0%
3948771 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 5.17e-01 91.2% 88.0%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 52.0 5.43e-01 96.5% 96.0%
5079733 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.82e-01 100.0% 68.0%
4979322 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.66 53.0 4.94e-01 96.5% 71.4%
3887965 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.66 52.0 5.32e-01 98.2% 92.7%
3878549 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.66 52.0 5.31e-01 98.2% 92.7%
3998215 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.65 52.0 4.85e-01 100.0% 69.3%
3673296 101.1.1.293 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_NDX 0.64 55.0 5.20e-01 100.0% 84.3%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.64 49.0 5.14e-01 94.7% 98.0%
3810921 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 55.0 5.46e-01 100.0% 95.0%
3333387 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.63 55.0 4.09e-01 100.0% 48.7%
3530185 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.62 54.0 4.60e-01 100.0% 65.3%
3891759 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.61 53.0 4.56e-01 100.0% 65.3%
4103293 101.1.2.62 ↗ alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD 0.61 52.0 4.71e-01 96.5% 93.8%
3196401 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 49.0 5.05e-01 93.0% 96.4%
4975263 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.61 50.0 4.44e-01 100.0% 62.4%
4933483 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.34e-01 100.0% 61.2%
3417671 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.61 52.0 4.49e-01 100.0% 64.2%
3934874 101.1.1.396 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Arg_repressor 0.61 48.0 4.90e-01 98.2% 92.7%
4988081 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.59e-01 100.0% 75.7%
3920226 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.60 52.0 4.45e-01 100.0% 65.3%
3881038 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.60 51.0 5.02e-01 96.5% 95.0%
3322020 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.60 51.0 4.04e-01 100.0% 48.8%
3365888 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.59 49.0 3.68e-01 100.0% 35.5%
3642684 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.58 41.0 3.87e-01 71.9% 67.1%
3293055 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.58 50.0 4.81e-01 100.0% 89.2%
4955367 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.49e-01 100.0% 80.0%
3445897 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.55 38.0 3.76e-01 77.2% 86.2%
4988076 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 4.24e-01 98.2% 83.8%
3401673 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.52 44.0 3.79e-01 98.2% 89.5%
3909938 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.52 42.0 3.79e-01 100.0% 67.8%