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NC_042074.1__YP_009618424.1__FDI98_gp135__00028

Bact-Vir

NC_042074.1__YP_009618424.1__FDI98_gp135__00028

Identity

Accession:
NC_042074 ↗
Kingdom:
phage

Quality

95.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Jesfedecavirus› Vibrio_phage_JSF10

TaxID: 1983593

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-73
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.66 46.0 3.87e-01 73.6% 79.5%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 44.0 3.45e-01 72.2% 71.5%
4o2wD00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.61 43.0 2.75e-01 73.6% 27.7%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.59 46.0 3.41e-01 93.1% 31.3%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 44.0 2.82e-01 81.9% 43.6%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.15e-01 91.7% 98.5%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.57 39.0 3.57e-01 73.6% 56.0%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 41.0 2.70e-01 79.2% 27.8%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.56 33.0 3.31e-01 93.1% 55.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 34.0 3.78e-01 80.6% 84.6%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.30e-01 79.2% 79.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.91e-01 90.3% 79.7%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.94e-01 91.7% 85.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 44.0 3.24e-01 95.8% 56.5%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 48.0 4.01e-01 98.6% 89.9%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 37.0 2.60e-01 75.0% 57.8%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.25e-01 72.2% 90.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3559155 1020.1.1.63 ↗ extended segments › Ezh2 N-terminal domain › Ezh2 N-terminal domain › Ezh2 N-terminal domain › CATSPERG_beta-prop 0.64 48.0 2.97e-01 81.9% 36.4%
3958051 324.1.1.0 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like 0.63 33.0 2.71e-01 94.4% 26.7%
5074066 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.63 36.0 2.88e-01 97.2% 29.3%
5070602 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.63 36.0 2.87e-01 97.2% 29.3%
3978775 4200.1.1.1 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF 0.61 50.0 3.74e-01 91.7% 34.7%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 37.0 4.18e-01 97.2% 87.3%
3261235 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 42.0 4.08e-01 80.6% 76.5%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 42.0 3.92e-01 80.6% 75.6%
3936468 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 3.80e-01 81.9% 73.0%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 40.0 3.74e-01 77.8% 73.3%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 39.0 3.76e-01 77.8% 74.1%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 40.0 3.80e-01 79.2% 81.2%
3407854 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 40.0 3.68e-01 80.6% 74.7%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 38.0 3.71e-01 77.8% 75.3%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 33.0 3.76e-01 80.6% 86.0%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 36.0 2.79e-01 77.8% 29.1%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.53 38.0 3.71e-01 77.8% 65.9%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 38.0 3.63e-01 77.8% 73.3%
3661639 6.1.1.34 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF7910 0.53 38.0 3.09e-01 77.8% 67.7%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 38.0 3.60e-01 77.8% 75.6%
3854862 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 38.0 3.49e-01 77.8% 69.5%
3389177 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 38.0 3.51e-01 80.6% 77.0%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 37.0 3.56e-01 76.4% 69.9%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 36.0 1.97e-01 76.4% 3.5%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 37.0 3.61e-01 77.8% 77.5%
None — 0.51 36.0 2.01e-01 76.4% 4.4%
3577514 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.50 43.0 2.75e-01 95.8% 42.6%
4418620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 36.0 2.05e-01 76.4% 5.6%
3559865 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.50 36.0 3.21e-01 80.6% 94.1%