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NC_042074.1__YP_009618455.1__FDI98_gp104__00059
Bact-VirNC_042074.1__YP_009618455.1__FDI98_gp104__00059
Identity
- Accession:
- NC_042074 ↗
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Taxonomy
TaxID: 1983593
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-103
Domain cluster:
rep: LC487410.1__BBL19275.1__KIT04_106__00106__D3-101
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hkgA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 37.0 | 3.43e-01 | 81.2% | 48.5% |
| 2zplB00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.59 | 42.0 | 4.39e-01 | 75.2% | 93.6% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 34.0 | 3.50e-01 | 94.1% | 57.0% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.58 | 41.0 | 3.75e-01 | 74.3% | 72.4% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.57 | 33.0 | 3.78e-01 | 79.2% | 77.0% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.57 | 41.0 | 4.32e-01 | 97.0% | 86.4% |
| 4jvuA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.78e-01 | 70.3% | 80.0% |
| 4gafB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 4.01e-01 | 75.2% | 79.2% |
| 4mypA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 3.86e-01 | 77.2% | 95.9% |
| 4edjA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 41.0 | 4.17e-01 | 78.2% | 81.6% |
| 3wkmB01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 41.0 | 4.26e-01 | 79.2% | 89.4% |
| 2r15A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 3.91e-01 | 77.2% | 83.8% |
| 6iccA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 40.0 | 4.34e-01 | 78.2% | 91.9% |
| 4depC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.93e-01 | 77.2% | 84.3% |
| 3ix3A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.53 | 39.0 | 3.40e-01 | 78.2% | 71.2% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 33.0 | 2.54e-01 | 83.2% | 26.5% |
| 2kjpA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 37.0 | 4.03e-01 | 73.3% | 100.0% |
| 4yi7A02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.52 | 43.0 | 3.26e-01 | 92.1% | 82.3% |
| 2a22B00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 36.0 | 2.86e-01 | 72.3% | 49.8% |
| 5wy8B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.75e-01 | 74.3% | 84.7% |
| 8bxrA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.81e-01 | 75.2% | 82.1% |
| 2gy5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.68e-01 | 73.3% | 86.9% |
| 3gmgA00 | 3.30.70.1880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 | 0.51 | 44.0 | 3.98e-01 | 98.0% | 67.1% |
| 2nmsA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.53e-01 | 73.3% | 81.2% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 38.0 | 3.77e-01 | 100.0% | 74.5% |
| 5kolD00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.51 | 42.0 | 3.61e-01 | 93.1% | 76.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046464 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.68 | 33.0 | 3.15e-01 | 83.2% | 41.7% |
| 3386077 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.67 | 31.0 | 4.48e-01 | 80.2% | 97.8% |
| 5043799 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.61 | 43.0 | 4.15e-01 | 99.0% | 63.6% |
| 4149459 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 49.0 | 4.26e-01 | 88.1% | 70.3% |
| 3948050 | 4152.1.1.1 ↗ | a+b two layers › Shew3726-like › Shew3726-like › Shew3726-like › DUF1488 | 0.58 | 39.0 | 4.28e-01 | 84.2% | 86.3% |
| 3513352 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.58 | 52.0 | 5.03e-01 | 100.0% | 95.7% |
| 3873141 | 11.1.1.1093 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28299 | 0.58 | 42.0 | 4.02e-01 | 75.2% | 82.6% |
| 4514021 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.57 | 42.0 | 4.37e-01 | 78.2% | 86.3% |
| 3321727 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.57 | 36.0 | 4.08e-01 | 71.3% | 91.4% |
| 3241311 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 33.0 | 2.71e-01 | 79.2% | 30.5% |
| 5012954 | 632.2.1.40 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 | 0.56 | 38.0 | 3.46e-01 | 100.0% | 50.7% |
| 3697816 | 2008.1.1.99 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 | 0.56 | 50.0 | 4.09e-01 | 100.0% | 96.2% |
| 5077736 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.55 | 49.0 | 3.85e-01 | 100.0% | 47.6% |
| 4957226 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.55 | 37.0 | 3.77e-01 | 75.2% | 70.0% |
| 3549715 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.54 | 38.0 | 3.92e-01 | 73.3% | 76.8% |
| 3734714 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.54 | 47.0 | 3.57e-01 | 99.0% | 75.4% |
| 3784793 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 39.0 | 3.53e-01 | 76.2% | 73.6% |
| 3759604 | 7.1.1.4 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 | 0.54 | 38.0 | 3.54e-01 | 75.2% | 57.8% |
| 4479016 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.53 | 37.0 | 3.64e-01 | 72.3% | 97.3% |
| 3579467 | 304.151.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › PF25899 | 0.53 | 38.0 | 3.59e-01 | 74.3% | 97.6% |
| 4949090 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.53 | 40.0 | 4.10e-01 | 94.1% | 84.2% |
| 4028916 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.53 | 47.0 | 4.60e-01 | 98.0% | 91.8% |
| 3328146 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.53 | 36.0 | 3.34e-01 | 91.1% | 53.3% |
| 3391610 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 38.0 | 3.34e-01 | 75.2% | 94.7% |
| 4959373 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.52 | 39.0 | 3.34e-01 | 78.2% | 72.1% |
| 4972211 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 44.0 | 3.01e-01 | 99.0% | 83.9% |
| 4461893 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 37.0 | 2.36e-01 | 75.2% | 96.4% |
| 1489902 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 38.0 | 3.77e-01 | 100.0% | 74.5% |
| 3707085 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.51 | 37.0 | 2.90e-01 | 77.2% | 39.5% |
| 3719842 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.50 | 37.0 | 2.67e-01 | 78.2% | 28.5% |
| 4130753 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.50 | 37.0 | 2.57e-01 | 78.2% | 24.6% |
| 5058018 | 331.5.1.1 ↗ | a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 | 0.50 | 41.0 | 3.90e-01 | 99.0% | 75.0% |