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NC_042082.1__YP_009619940.1__FDJ07_gp045__00045
Bact-VirNC_042082.1__YP_009619940.1__FDJ07_gp045__00045
Identity
- Accession:
- NC_042082 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Taxonomy
TaxID: 2044561
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-61
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.73 | 64.0 | 4.76e-01 | 100.0% | 79.7% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.72 | 50.0 | 3.46e-01 | 72.9% | 38.2% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.68 | 59.0 | 4.48e-01 | 100.0% | 65.5% |
| 1xm8A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.67 | 58.0 | 3.85e-01 | 100.0% | 25.2% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.67 | 50.0 | 3.96e-01 | 78.0% | 77.8% |
| 3wirA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.66 | 45.0 | 2.77e-01 | 72.9% | 32.4% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.66 | 57.0 | 4.24e-01 | 98.3% | 81.0% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.65 | 55.0 | 4.50e-01 | 96.6% | 77.1% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 50.0 | 4.45e-01 | 84.7% | 74.7% |
| 6t0bc02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.64 | 50.0 | 3.57e-01 | 89.8% | 50.3% |
| 3a7kB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 52.0 | 3.47e-01 | 96.6% | 89.1% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.61 | 49.0 | 3.80e-01 | 91.5% | 70.5% |
| 2fd5A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 46.0 | 3.54e-01 | 79.7% | 62.9% |
| 4nkhE00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.61 | 49.0 | 3.26e-01 | 88.1% | 29.3% |
| 2q0iA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 47.0 | 2.96e-01 | 83.1% | 33.0% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.60 | 47.0 | 4.26e-01 | 86.4% | 85.4% |
| 1bccH00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.60 | 43.0 | 4.19e-01 | 78.0% | 72.7% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 3.51e-01 | 74.6% | 50.5% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 4.34e-01 | 81.4% | 80.0% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 47.0 | 4.49e-01 | 96.6% | 78.9% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 46.0 | 4.02e-01 | 93.2% | 66.0% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 42.0 | 2.88e-01 | 81.4% | 23.6% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.55 | 44.0 | 3.79e-01 | 84.7% | 67.0% |
| 2qguA02 | 1.10.10.640 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein | 0.55 | 41.0 | 3.73e-01 | 79.7% | 75.6% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.54 | 46.0 | 3.67e-01 | 96.6% | 61.3% |
| 6nmnA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 44.0 | 3.56e-01 | 96.6% | 60.2% |
| 2qdjA03 | 1.10.472.140 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.53 | 39.0 | 3.17e-01 | 79.7% | 59.5% |
| 2xr1A03 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 43.0 | 2.79e-01 | 91.5% | 20.0% |
| 1rw9A01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.52 | 47.0 | 2.86e-01 | 100.0% | 84.8% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979567 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.80 | 69.0 | 6.01e-01 | 96.6% | 94.4% |
| 3839950 | 601.7.1.57 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Apea | 0.74 | 63.0 | 5.01e-01 | 98.3% | 75.2% |
| 3232043 | 101.1.2.473 ↗ | alpha arrays › HTH › HTH › winged helix domain › UFL1_C | 0.71 | 59.0 | 5.02e-01 | 94.9% | 84.0% |
| 4999471 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.71 | 50.0 | 3.91e-01 | 72.9% | 36.7% |
| 3974600 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.70 | 58.0 | 4.55e-01 | 93.2% | 60.0% |
| 3483527 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 53.0 | 3.48e-01 | 81.4% | 26.7% |
| 5033439 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.68 | 53.0 | 5.09e-01 | 86.4% | 87.1% |
| 3711337 | 632.24.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain | 0.68 | 57.0 | 5.58e-01 | 98.3% | 100.0% |
| 3622568 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.67 | 54.0 | 4.74e-01 | 89.8% | 71.1% |
| 3653668 | 192.29.1.6 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1666 | 0.66 | 56.0 | 4.95e-01 | 93.2% | 88.2% |
| 3706915 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.66 | 54.0 | 5.22e-01 | 96.6% | 95.7% |
| 3999043 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 56.0 | 4.16e-01 | 98.3% | 50.0% |
| 3978379 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.65 | 55.0 | 4.02e-01 | 96.6% | 77.6% |
| 4034285 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.65 | 54.0 | 4.12e-01 | 96.6% | 52.0% |
| 4655838 | 5039.1.1.1 ↗ | alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3 | 0.65 | 50.0 | 3.51e-01 | 84.7% | 48.9% |
| 3715999 | 3817.1.1.1 ↗ | alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 | 0.64 | 55.0 | 4.67e-01 | 98.3% | 78.0% |
| 4112769 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.64 | 51.0 | 4.15e-01 | 91.5% | 61.7% |
| 4999255 | 601.37.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 | 0.64 | 51.0 | 4.49e-01 | 89.8% | 76.7% |
| 3849025 | 601.1.1.145 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › IQUB | 0.63 | 53.0 | 4.36e-01 | 98.3% | 61.7% |
| 3530765 | 192.29.1.203 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › IQUB | 0.63 | 53.0 | 4.40e-01 | 100.0% | 64.3% |
| None | — | 0.63 | 54.0 | 3.34e-01 | 100.0% | 17.1% | |
| 3189385 | 601.29.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like | 0.62 | 50.0 | 3.89e-01 | 91.5% | 53.6% |
| None | — | 0.62 | 46.0 | 2.93e-01 | 81.4% | 67.9% | |
| 1200774 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.61 | 43.0 | 2.98e-01 | 74.6% | 70.6% |
| 4667987 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.61 | 41.0 | 4.08e-01 | 71.2% | 69.8% |
| 3334764 | 5059.1.1.24 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PUNUT | 0.60 | 52.0 | 3.21e-01 | 96.6% | 61.4% |
| 3930417 | 7004.1.1.0 ↗ | 0.60 | 49.0 | 4.38e-01 | 91.5% | 70.6% | |
| 3923325 | 109.4.1.62 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nic96 | 0.60 | 49.0 | 2.82e-01 | 94.9% | 38.3% |
| 3533419 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 47.0 | 3.74e-01 | 94.9% | 80.7% |
| 3339117 | 5059.1.1.24 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PUNUT | 0.58 | 51.0 | 3.17e-01 | 98.3% | 69.1% |
| 3973823 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.58 | 44.0 | 3.64e-01 | 83.1% | 90.9% |
| 4164512 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.58 | 44.0 | 2.96e-01 | 81.4% | 90.7% |
| 3230760 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.58 | 43.0 | 3.19e-01 | 81.4% | 50.0% |
| 3349254 | 5059.1.1.24 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PUNUT | 0.58 | 50.0 | 3.14e-01 | 98.3% | 68.4% |
| 4362265 | 101.28.1.1 ↗ | alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC | 0.58 | 42.0 | 3.58e-01 | 79.7% | 62.9% |
| 3561951 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.57 | 46.0 | 2.60e-01 | 100.0% | 11.6% |
| 4045135 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.57 | 46.0 | 2.98e-01 | 89.8% | 92.1% |
| 3872158 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 42.0 | 3.77e-01 | 78.0% | 60.0% |
| 4489833 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.57 | 42.0 | 3.96e-01 | 78.0% | 84.3% |
| 3330282 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.56 | 50.0 | 4.19e-01 | 100.0% | 74.0% |
| 3804997 | 568.1.1.8 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › GCK | 0.56 | 49.0 | 4.00e-01 | 98.3% | 74.5% |
| 4947361 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.52 | 43.0 | 2.85e-01 | 93.2% | 51.2% |
| 3592112 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.51 | 42.0 | 2.98e-01 | 94.9% | 80.5% |
| 3038786 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.50 | 44.0 | 3.03e-01 | 100.0% | 95.6% |
| 4281883 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.50 | 37.0 | 2.90e-01 | 81.4% | 80.7% |