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NC_042082.1__YP_009619949.1__FDJ07_gp054__00054

Bact-Vir

NC_042082.1__YP_009619949.1__FDJ07_gp054__00054

Identity

Accession:
NC_042082 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Delepquintavirus› Stenotrophomonas_phage_vB_SmaS_DLP_5

TaxID: 2044561

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 103-166
PDB
Domain cluster: rep: OP918262.1__WAS28540.1__X__00094__D139-199
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 3.79e-01 76.6% 62.2%
3efaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.21e-01 82.8% 67.8%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.42e-01 76.6% 70.8%
3aiiA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 43.0 2.88e-01 98.4% 76.8%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 36.0 3.36e-01 76.6% 71.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3344263 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 43.0 3.05e-01 81.2% 28.4%
4463004 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.57 42.0 3.16e-01 82.8% 62.0%
4000086 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 44.0 2.51e-01 95.3% 76.6%
4957918 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 39.0 2.91e-01 82.8% 64.2%
4954193 298.2.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.52 36.0 2.92e-01 98.4% 33.8%
4987446 298.2.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.51 43.0 3.33e-01 98.4% 41.3%
3948353 304.56.1.5 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › PaaX_M 0.51 36.0 3.48e-01 76.6% 66.7%
4935066 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.51 35.0 3.16e-01 73.4% 77.9%
5049314 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 38.0 3.00e-01 89.1% 98.8%