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NC_042082.1__YP_009619978.1__FDJ07_gp137__00083

Bact-Vir

Identity

Accession:: NC_042082 ↗
Kingdom:: phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Delepquintavirus› Stenotrophomonas_phage_vB_SmaS_DLP_5

TaxID: 2044561

Cluster

View cluster (4 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-145

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6k6iA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.65	46.0	3.94e-01	71.7%	91.8%
1a7eA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.60	43.0	4.66e-01	73.1%	97.5%
4qreA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.55	40.0	3.79e-01	74.5%	92.5%
3ed5A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.55	32.0	3.92e-01	88.3%	95.2%
3kflA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.55	39.0	3.65e-01	72.4%	92.0%
2lt3A01	1.20.58.1290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain	0.54	34.0	3.89e-01	71.7%	89.0%
2xzeB00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.53	37.0	3.82e-01	74.5%	74.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3367916	5067.1.1.13 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT	0.54	40.0	3.98e-01	91.0%	72.9%
3182235	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.54	42.0	3.55e-01	82.8%	80.8%
3834034	5067.1.1.13 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT	0.53	39.0	3.80e-01	90.3%	67.3%
4982918	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.52	41.0	3.75e-01	82.1%	93.6%
3595409	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.52	36.0	3.48e-01	71.0%	90.6%
3690856	1082.1.1.1 ↗	alpha bundles › Glycogen debranching enzyme (GDE) middle domain 2 › Glycogen debranching enzyme (GDE) middle domain 2 › Glycogen debranching enzyme (GDE) middle domain 2 › hGDE_central	0.52	47.0	4.60e-01	99.3%	93.8%

D2 high residues 239-351

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2f2cA02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.69	46.0	4.80e-01	85.0%	73.6%
1xszA02	1.10.1000.11	Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2	0.61	49.0	4.94e-01	92.9%	86.1%
1d2tA00	1.20.144.10	Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase	0.58	48.0	3.89e-01	90.3%	64.9%
1kn1B00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.57	47.0	4.20e-01	89.4%	67.1%
1x3kA01	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	46.0	4.23e-01	86.7%	71.4%
4zvaA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	45.0	4.17e-01	86.7%	65.8%
1wkbA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.53	47.0	3.15e-01	96.5%	34.1%
3fbzA01	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	41.0	4.28e-01	86.7%	95.1%
4qs8A01	3.40.367.20	Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 ›	0.51	43.0	3.33e-01	95.6%	67.1%
3t69A02	3.30.420.310	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain	0.50	44.0	3.55e-01	98.2%	87.6%
4im7A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.50	41.0	3.43e-01	91.2%	86.5%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3671163	101.1.1.267 ↗	alpha arrays › HTH › HTH › Three-helical HTH › PF26138	0.70	47.0	4.81e-01	85.0%	70.9%
3926197	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.67	47.0	4.84e-01	79.6%	75.5%
4946659	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.62	45.0	4.62e-01	87.6%	80.0%
3927015	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.61	47.0	4.59e-01	82.3%	81.6%
3272819	3919.1.1.2 ↗	alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN	0.59	42.0	4.28e-01	73.5%	87.3%
4016998	132.3.1.0 ↗	alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ	0.58	38.0	4.47e-01	84.1%	100.0%
3724411	4156.1.1.1 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63	0.58	48.0	4.22e-01	89.4%	60.6%
3726887	131.1.1.0 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like	0.57	48.0	3.94e-01	93.8%	58.2%
4029585	5081.1.1.2 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1	0.56	47.0	4.00e-01	96.5%	61.5%
3712132	5081.1.1.2 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1	0.56	47.0	3.99e-01	94.7%	62.1%
3174664	4156.1.1.1 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63	0.55	47.0	4.10e-01	92.0%	65.9%
3564914	3187.1.1.21 ↗	alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › PF28481	0.52	37.0	3.29e-01	73.5%	97.6%
4978391	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.50	35.0	3.71e-01	72.6%	82.0%

D3 medium residues 150-225

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gtsA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.52	32.0	3.26e-01	100.0%	62.3%
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.51	34.0	3.25e-01	97.4%	60.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3472739	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	40.0	2.84e-01	72.4%	52.2%
3864846	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.52	44.0	3.01e-01	98.7%	53.5%