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NC_042082.1__YP_009620033.1__FDJ07_gp082__00138

Bact-Vir

Identity

Accession:: NC_042082 ↗
Kingdom:: phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Delepquintavirus› Stenotrophomonas_phage_vB_SmaS_DLP_5

TaxID: 2044561

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-110

PDB

Domain cluster: rep: MG251388.1__ATW62261.1__Psp6_00008__00008__D2-80

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4adiA01	2.60.98.30	Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Rubella membrane glycoprotein E1, domain 1	0.69	46.0	5.26e-01	92.7%	94.8%
3e19B01	2.30.30.90	Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA)	0.58	34.0	4.38e-01	91.7%	100.0%
3u2gA01	2.60.40.4190	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.56	48.0	4.37e-01	92.7%	98.6%
3lidA03	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.52	38.0	4.02e-01	94.5%	87.5%
1xovA03	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	25.0	2.97e-01	89.0%	65.3%
5o99A00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.50	27.0	3.51e-01	92.7%	95.0%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5014776	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.87	61.0	7.06e-01	97.2%	97.5%
4984134	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.61	40.0	4.81e-01	99.1%	97.3%
353902	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.60	40.0	4.70e-01	99.1%	94.8%
5020812	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.60	39.0	4.67e-01	97.2%	96.0%
5063688	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.60	39.0	4.37e-01	99.1%	83.1%
4957418	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.59	39.0	4.69e-01	100.0%	98.7%
3904790	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.59	33.0	3.69e-01	100.0%	69.4%
3502388	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.59	31.0	3.65e-01	98.2%	73.3%
4951199	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.59	39.0	4.59e-01	99.1%	97.3%
5048137	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.58	38.0	4.58e-01	99.1%	100.0%
3675857	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.58	37.0	3.04e-01	100.0%	37.8%
5078626	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.57	38.0	4.49e-01	99.1%	100.0%
5078178	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.56	38.0	4.51e-01	99.1%	100.0%
4610859	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.54	30.0	3.79e-01	96.3%	92.3%
3882808	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.53	31.0	3.63e-01	97.2%	84.0%
3503780	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.53	30.0	3.80e-01	96.3%	95.4%
165220	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.51	29.0	3.50e-01	93.6%	83.6%
3750163	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.51	30.0	3.64e-01	95.4%	90.0%
3217113	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.51	26.0	3.36e-01	91.7%	84.6%