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NC_042085.1__YP_009620183.1__FDJ10_gp25__00025
Bact-VirNC_042085.1__YP_009620183.1__FDJ10_gp25__00025
Identity
- Accession:
- NC_042085 ↗
- Kingdom:
- phage
Quality
73.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Zierdtviridae›
Ceetrepovirus›
Corynebacterium_phage_C3PO
TaxID: 2047868
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-115
Domain cluster:
representative
D2
medium
residues 146-202
Domain cluster:
representative
D3
medium
residues 510-584
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zkkB00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.55 | 43.0 | 3.42e-01 | 86.7% | 63.4% |
| 3pvnA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 45.0 | 3.29e-01 | 92.0% | 68.9% |
| 6ictA01 | 3.90.1410.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 | 0.53 | 44.0 | 3.03e-01 | 98.7% | 68.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3190867 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.55 | 44.0 | 3.26e-01 | 90.7% | 71.6% |
| 3447357 | 70.3.1.2 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › zf-MYND | 0.55 | 40.0 | 3.25e-01 | 86.7% | 41.4% |
| 3651047 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.54 | 35.0 | 2.84e-01 | 82.7% | 34.0% |
D4
medium
residues 585-662
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vcnA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.57 | 46.0 | 4.27e-01 | 92.3% | 71.8% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.53 | 45.0 | 3.75e-01 | 96.2% | 95.1% |
| 4qawH03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 43.0 | 3.72e-01 | 97.4% | 79.1% |
| 1hnfA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 32.0 | 3.21e-01 | 92.3% | 62.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4245469 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.56 | 43.0 | 3.42e-01 | 85.9% | 50.9% |
| 5014881 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 38.0 | 3.56e-01 | 80.8% | 60.0% |
| 5010807 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 38.0 | 3.88e-01 | 92.3% | 82.7% |
D5
medium
residues 680-738