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NC_042087.1__YP_009620370.1__FDJ12_gp25__00025

Bact-Vir

NC_042087.1__YP_009620370.1__FDJ12_gp25__00025

Identity

Accession:
NC_042087 ↗
Kingdom:
phage

Quality

59.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Ceetrepovirus› Corynebacterium_phage_Zion

TaxID: 2047871

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 197-231
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e0vB01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.73 56.0 3.80e-01 100.0% 62.7%
3eoeD01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.72 58.0 4.04e-01 100.0% 60.6%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.71 56.0 5.43e-01 100.0% 79.1%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.68 54.0 4.86e-01 100.0% 61.8%
3u4qA06 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.68 55.0 3.47e-01 100.0% 26.4%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.65 51.0 3.31e-01 100.0% 23.7%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.64 49.0 3.48e-01 100.0% 61.0%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 49.0 3.51e-01 100.0% 41.7%
6xwlE02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 48.0 3.34e-01 100.0% 29.2%
6z9uA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 50.0 3.90e-01 100.0% 47.0%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.60 48.0 4.11e-01 100.0% 52.3%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.60 44.0 3.97e-01 100.0% 73.4%
4cooA03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 46.0 3.26e-01 100.0% 27.0%
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.59 47.0 3.29e-01 100.0% 57.1%
1xo1A02 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.59 43.0 2.90e-01 100.0% 18.9%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.59 42.0 3.86e-01 100.0% 70.8%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.58 43.0 3.81e-01 100.0% 71.6%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 42.0 3.32e-01 100.0% 40.0%
2hjsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 45.0 2.95e-01 100.0% 23.9%
2jjqA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 3.06e-01 100.0% 28.9%
3d8uB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 40.0 2.89e-01 100.0% 60.0%
3cu2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 39.0 2.51e-01 97.1% 26.5%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.50 40.0 2.77e-01 100.0% 43.4%
7uzsX01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 2.79e-01 100.0% 54.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4065149 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.75 64.0 4.91e-01 100.0% 72.3%
5066595 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.75 63.0 3.96e-01 100.0% 25.8%
4338485 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.75 62.0 4.88e-01 100.0% 75.0%
4505937 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.75 62.0 4.78e-01 100.0% 70.6%
4286002 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.74 62.0 4.63e-01 100.0% 63.8%
4113842 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.74 61.0 4.71e-01 100.0% 70.6%
3917719 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.69 54.0 5.12e-01 97.1% 73.3%
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.67 50.0 4.78e-01 100.0% 68.9%
4328178 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 50.0 4.46e-01 100.0% 80.0%
5042221 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 47.0 3.61e-01 100.0% 43.8%
3699899 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.57 43.0 3.20e-01 100.0% 33.3%
3597599 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.56 41.0 3.30e-01 100.0% 40.0%
4456383 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 45.0 2.70e-01 100.0% 50.2%
3231085 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 45.0 3.96e-01 100.0% 78.0%
5028378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 35.0 3.40e-01 82.9% 71.1%