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NC_042087.1__YP_009620371.1__FDJ12_gp26__00026

Bact-Vir

NC_042087.1__YP_009620371.1__FDJ12_gp26__00026

Identity

Accession:
NC_042087 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Ceetrepovirus› Corynebacterium_phage_Zion

TaxID: 2047871

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-119
PDB
Domain cluster: rep: MH047631.1__AVR56904.1__PBI_TRISCUIT_31__00031__D4-134
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nkgA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.77 48.0 5.63e-01 100.0% 87.1%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.67 38.0 4.36e-01 99.2% 76.5%
2hr0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 47.0 4.89e-01 95.8% 80.7%
3e9tB00 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.65 49.0 5.08e-01 95.8% 84.1%
7vcrA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.62 49.0 5.16e-01 98.3% 94.2%
3fq4B01 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.62 48.0 4.88e-01 96.6% 84.5%
2q1fA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.61 43.0 3.79e-01 97.5% 50.3%
4cvuA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 4.94e-01 95.8% 87.1%
4irzA02 2.60.40.1460 Mainly Beta › Sandwich › Immunoglobulin-like › Integrin domains. Chain A, domain 2 0.60 53.0 4.82e-01 95.8% 78.0%
1vphB00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.60 47.0 4.48e-01 81.4% 87.6%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 38.0 3.63e-01 98.3% 52.8%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 40.0 3.93e-01 97.5% 64.0%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 41.0 3.64e-01 97.5% 50.0%
2huhA01 2.60.40.1600 Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like 0.59 48.0 4.60e-01 100.0% 76.5%
5z1aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.40e-01 96.6% 78.8%
2bgoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 37.0 3.78e-01 97.5% 64.7%
4qhpA04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.58 41.0 4.41e-01 94.9% 85.1%
3q13A01 2.60.40.2130 Mainly Beta › Sandwich › Immunoglobulin-like › F-spondin domain 0.57 51.0 4.39e-01 100.0% 79.1%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 40.0 3.77e-01 96.6% 58.5%
2xidA04 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.57 48.0 4.85e-01 98.3% 93.0%
3aclA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 33.0 3.35e-01 85.6% 57.6%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 32.0 3.43e-01 82.2% 63.6%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 4.11e-01 97.5% 67.1%
4mkmA01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 4.51e-01 95.8% 77.4%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.55 48.0 4.62e-01 95.8% 85.2%
7clyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 49.0 4.33e-01 100.0% 92.0%
4d7yA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 3.59e-01 96.6% 61.8%
3l4cA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 49.0 4.29e-01 100.0% 94.9%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 35.0 3.59e-01 95.8% 66.4%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.54 38.0 3.85e-01 98.3% 72.6%
2i1sA00 3.10.290.30 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like 0.54 41.0 3.61e-01 99.2% 53.4%
1dwuA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.54 41.0 4.12e-01 100.0% 79.3%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 3.70e-01 89.0% 68.6%
3itqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 40.0 3.44e-01 81.4% 49.7%
1gwmA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 38.0 3.51e-01 100.0% 57.5%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 3.55e-01 99.2% 58.3%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 34.0 3.15e-01 96.6% 49.4%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 3.69e-01 80.5% 72.6%
1djxA03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 46.0 4.48e-01 100.0% 90.1%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.70e-01 89.8% 68.9%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 30.0 3.17e-01 81.4% 62.5%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.73e-01 100.0% 69.5%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 39.0 4.00e-01 83.1% 88.9%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.86e-01 86.4% 83.3%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.37e-01 97.5% 46.5%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 3.73e-01 81.4% 90.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932891 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 51.0 5.25e-01 95.8% 83.6%
4940492 11.1.1.138 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.67 50.0 5.17e-01 95.8% 83.6%
4933358 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 50.0 5.06e-01 95.8% 80.9%
5062233 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 47.0 4.94e-01 94.1% 83.8%
4970198 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 5.01e-01 95.8% 82.7%
4406352 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 39.0 3.86e-01 97.5% 55.2%
4550851 11.1.4.22 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Mfa_like_1 0.64 56.0 5.45e-01 100.0% 85.4%
5058553 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 47.0 4.96e-01 94.9% 85.7%
4162853 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.64 47.0 4.23e-01 96.6% 56.2%
5061936 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.57e-01 95.8% 73.9%
5081038 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.78e-01 94.1% 85.0%
5069245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 47.0 4.87e-01 95.8% 82.7%
4891125 11.1.1.80 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_beta 0.63 47.0 4.41e-01 94.9% 63.4%
5056990 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 5.03e-01 95.8% 90.5%
5018266 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.62 49.0 4.61e-01 82.2% 87.9%
3520325 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.61 48.0 4.39e-01 83.1% 89.2%
3206271 11.1.4.16 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw 0.61 57.0 5.29e-01 100.0% 91.7%
3735496 11.1.1.421 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC10 0.61 47.0 4.63e-01 94.9% 75.4%
5069419 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 5.03e-01 96.6% 92.5%
3274604 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.83e-01 89.8% 89.6%
3930183 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 4.44e-01 97.5% 85.7%
4992811 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 4.65e-01 95.8% 87.0%
4981023 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.59e-01 95.8% 81.6%
3879286 3156.1.1.25 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › CUB_CDCP1_1 0.57 35.0 4.27e-01 84.7% 97.3%
3880408 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 44.0 4.53e-01 96.6% 85.2%
3631162 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.57e-01 97.5% 83.1%
2088111 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.57 44.0 4.41e-01 95.8% 80.2%
2411956 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 37.0 3.58e-01 97.5% 57.1%
3503404 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 38.0 3.98e-01 96.6% 73.1%
4938291 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.57 43.0 4.21e-01 96.6% 72.3%
5057700 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 4.46e-01 95.8% 81.7%
5039581 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 41.0 4.21e-01 97.5% 77.9%
3847753 11.2.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK-C2 0.56 50.0 4.30e-01 100.0% 88.9%
3027436 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.55 43.0 4.35e-01 95.8% 83.2%
3948310 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 33.0 3.14e-01 87.3% 49.3%
3256321 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.55 50.0 4.78e-01 100.0% 87.4%
3941824 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 44.0 3.94e-01 100.0% 61.8%
3996028 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.54 48.0 4.83e-01 99.2% 96.7%
3791166 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 38.0 3.83e-01 97.5% 70.2%
3592719 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 49.0 4.14e-01 100.0% 65.6%
3617798 10.32.1.229 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.54 38.0 3.77e-01 87.3% 68.8%
5056697 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 37.0 3.56e-01 96.6% 61.5%
3593524 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 47.0 3.95e-01 97.5% 56.6%
3778422 11.2.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK-C2 0.53 48.0 4.07e-01 100.0% 81.0%
5005656 11.1.1.1400 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1102 0.53 39.0 3.71e-01 81.4% 65.0%
3936820 11.1.1.818 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_2nd 0.53 44.0 4.03e-01 94.1% 68.4%
3493553 11.1.1.593 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS7_C 0.53 45.0 4.31e-01 95.8% 80.0%
3881458 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 43.0 4.24e-01 95.8% 82.3%
3285330 10.32.1.270 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mycobact_memb 0.52 38.0 4.22e-01 80.5% 100.0%
4981969 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.90e-01 96.6% 65.0%
360238 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 37.0 3.27e-01 99.2% 48.0%
3648822 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 4.04e-01 75.4% 89.0%
146645 10.32.1.16 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Clenterotox 0.52 36.0 3.66e-01 80.5% 71.4%
5041880 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 36.0 4.07e-01 87.3% 96.7%
4056698 11.1.1.365 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP1_ZP4_Ig-like 0.51 39.0 4.18e-01 94.9% 94.0%
3601282 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 44.0 2.44e-01 100.0% 6.2%
3392889 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.51 37.0 2.86e-01 74.6% 73.0%
3596070 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 46.0 4.15e-01 100.0% 81.2%
4023255 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 3.94e-01 96.6% 81.7%
2673723 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 40.0 3.82e-01 83.9% 77.2%
3892939 10.32.1.229 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.51 41.0 3.87e-01 86.4% 74.3%
4966081 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.50 37.0 3.33e-01 77.1% 60.1%