←Back to structures

NC_042091.1__YP_009620803.1__FDJ16_gp029__00134

Bact-Vir

NC_042091.1__YP_009620803.1__FDJ16_gp029__00134

Identity

Accession:
NC_042091 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nickievirus› Pseudomonas_phage_nickie

TaxID: 2048977

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-92
PDB
Domain cluster: rep: HQ615693.1__AEC53196.1__SCRM01_250__00250__D4-55
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.54e-01 92.6% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 46.0 5.17e-01 91.2% 94.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.93e-01 97.1% 78.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.94e-01 100.0% 78.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 41.0 4.80e-01 80.9% 95.7%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.64 50.0 5.04e-01 86.8% 100.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 5.39e-01 100.0% 100.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 44.0 4.83e-01 86.8% 92.6%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.83e-01 94.1% 88.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 5.26e-01 100.0% 100.0%
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 50.0 4.10e-01 100.0% 50.0%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 49.0 3.98e-01 100.0% 48.8%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 39.0 3.59e-01 82.4% 52.2%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 48.0 3.89e-01 100.0% 48.1%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.57 49.0 4.13e-01 92.6% 57.8%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 49.0 3.84e-01 97.1% 95.2%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 49.0 3.86e-01 100.0% 48.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 48.0 3.87e-01 100.0% 51.1%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.50e-01 88.2% 81.7%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.54e-01 89.7% 72.6%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.52 45.0 4.02e-01 100.0% 88.2%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.93e-01 100.0% 48.5%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.42e-01 100.0% 67.7%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.76e-01 95.6% 57.6%
2mfiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 34.0 3.12e-01 70.6% 53.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 67.0 5.98e-01 100.0% 73.7%
3407180 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.96e-01 98.5% 76.5%
3506279 4.1.1.112 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_1_RapA 0.71 52.0 5.64e-01 98.5% 96.4%
3336523 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.70 50.0 5.69e-01 92.6% 100.0%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.69 53.0 5.75e-01 100.0% 96.6%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.50e-01 91.2% 94.5%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.75e-01 98.5% 64.7%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.46e-01 98.5% 96.4%
4998148 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.96e-01 92.6% 89.1%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 44.0 4.99e-01 89.7% 94.0%
3709029 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.21e-01 97.1% 91.7%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 44.0 4.90e-01 89.7% 90.7%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.75e-01 97.1% 69.4%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.63 57.0 4.13e-01 98.5% 39.4%
3203187 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.61 51.0 3.44e-01 95.6% 58.9%
3468015 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.61 53.0 4.01e-01 97.1% 41.3%
4373825 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.61 48.0 3.92e-01 100.0% 46.8%
3384708 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.61 55.0 3.79e-01 100.0% 43.1%
3387378 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 54.0 4.99e-01 97.1% 87.1%
4162968 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 54.0 5.20e-01 100.0% 96.2%
3290509 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.61 45.0 4.18e-01 100.0% 62.2%
5017616 243.6.1.5 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › UPF0113_N 0.60 45.0 4.07e-01 82.4% 83.2%
3599576 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.60 48.0 3.62e-01 91.2% 81.1%
5013797 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.59 43.0 3.97e-01 77.9% 87.8%
4616080 63.1.1.3 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.59 47.0 3.66e-01 91.2% 84.0%
4101639 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.58 50.0 3.55e-01 97.1% 86.0%
3341084 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.58 49.0 4.28e-01 92.6% 98.0%
3354387 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.58 51.0 4.77e-01 98.5% 92.9%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.99e-01 98.5% 95.9%
3282002 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 51.0 3.50e-01 100.0% 80.9%
4668665 331.2.1.8 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.57 34.0 3.13e-01 76.5% 44.4%
3264377 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.77e-01 89.7% 71.7%
3401697 4357.1.1.4 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 0.55 44.0 4.11e-01 88.2% 74.1%
3740052 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.54 42.0 3.62e-01 89.7% 72.5%
3797608 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.70e-01 89.7% 74.5%
4501379 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.57e-01 73.5% 71.2%
4933485 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.52 38.0 3.57e-01 79.4% 80.0%
3854644 220.1.1.164 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.52 40.0 3.18e-01 85.3% 82.1%
3676821 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.52 41.0 2.44e-01 95.6% 21.3%
3079908 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 41.0 2.69e-01 95.6% 37.9%
None — 0.51 40.0 2.58e-01 89.7% 83.8%
3766117 220.1.1.164 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.51 40.0 3.33e-01 89.7% 88.5%
3879258 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 41.0 2.64e-01 95.6% 41.3%
4399722 1013.1.1.2 ↗ beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD40 0.50 40.0 2.53e-01 95.6% 29.1%
3194883 5.1.4.262 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.50 39.0 2.49e-01 91.2% 80.9%