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NC_042094.1__YP_009621237.1__FDJ19_gp142__00149

Bact-Vir

NC_042094.1__YP_009621237.1__FDJ19_gp142__00149

Identity

Accession:
NC_042094 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Cetovirus› Vibrio_phage_Ceto

TaxID: 2570300

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-140
PDB
Domain cluster: rep: NC_020842.1__YP_007673413.1__CGPG_00031__00031__D20-185
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.80 72.0 6.70e-01 95.1% 99.3%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.77 71.0 6.46e-01 97.5% 98.7%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.76 71.0 6.86e-01 98.4% 98.5%
2f1vA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.75 69.0 5.97e-01 98.4% 98.9%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.73 60.0 6.37e-01 98.4% 98.1%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.70 57.0 5.54e-01 91.8% 77.4%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.70 65.0 5.36e-01 98.4% 97.5%
2lhfA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.70 63.0 5.55e-01 97.5% 98.9%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 57.0 5.24e-01 99.2% 69.5%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.69 61.0 5.77e-01 97.5% 99.3%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.68 56.0 5.73e-01 99.2% 89.8%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.65 57.0 5.48e-01 97.5% 98.6%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.64 59.0 4.49e-01 100.0% 90.0%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 58.0 5.64e-01 97.5% 91.7%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 57.0 5.24e-01 100.0% 97.5%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.63 57.0 4.44e-01 97.5% 97.6%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.63 49.0 4.84e-01 91.0% 77.1%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.62 53.0 3.79e-01 92.6% 94.9%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 55.0 4.86e-01 98.4% 92.0%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.61 52.0 4.00e-01 95.9% 99.7%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 52.0 4.37e-01 92.6% 89.8%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.88e-01 91.8% 91.7%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.74e-01 92.6% 92.3%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.58 48.0 3.88e-01 91.0% 85.5%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 4.72e-01 99.2% 81.0%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.77e-01 91.8% 88.8%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.41e-01 91.0% 94.3%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.40e-01 91.8% 77.4%
2fxtA00 3.10.450.240 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.09e-01 91.0% 72.9%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.56 50.0 3.94e-01 97.5% 99.2%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 50.0 4.87e-01 98.4% 100.0%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 47.0 3.55e-01 91.8% 97.0%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.55 41.0 3.73e-01 80.3% 93.6%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 44.0 4.00e-01 86.9% 70.9%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 46.0 3.55e-01 92.6% 81.6%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.54 46.0 3.43e-01 93.4% 43.3%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 4.43e-01 91.0% 89.0%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 4.07e-01 93.4% 73.8%
1by5A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.53 38.0 2.45e-01 73.0% 39.7%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 44.0 3.18e-01 90.2% 95.2%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 40.0 3.77e-01 79.5% 85.5%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 4.51e-01 91.0% 95.8%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 4.21e-01 95.1% 81.6%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 4.18e-01 93.4% 82.6%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.96e-01 92.6% 75.5%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 4.07e-01 95.1% 79.4%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.50 41.0 2.61e-01 87.7% 31.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967771 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.91 85.0 8.34e-01 96.7% 99.2%
3945260 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.87 81.0 7.28e-01 96.7% 91.8%
4512746 5084.1.1.9 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL 0.81 75.0 6.80e-01 97.5% 96.2%
191268 5084.1.1.9 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL 0.80 72.0 6.70e-01 95.1% 99.3%
3165475 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.80 72.0 6.53e-01 95.1% 99.4%
4042627 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.79 73.0 6.45e-01 96.7% 99.4%
4224449 5084.1.1.29 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 0.79 75.0 6.49e-01 99.2% 98.9%
4283551 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.78 74.0 6.05e-01 100.0% 94.8%
4537321 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.77 72.0 6.22e-01 98.4% 95.6%
3838035 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.77 71.0 5.88e-01 97.5% 96.0%
3837948 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.77 70.0 5.94e-01 96.7% 96.8%
4301927 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.77 70.0 5.59e-01 97.5% 95.6%
3837982 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.76 71.0 6.08e-01 97.5% 92.2%
4636309 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.76 68.0 5.51e-01 95.1% 99.5%
3839675 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.75 68.0 5.85e-01 95.1% 100.0%
4971555 9.13.1.3 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.74 59.0 5.52e-01 82.8% 84.0%
5027751 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.72 65.0 6.00e-01 95.1% 100.0%
3203571 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.71 58.0 5.55e-01 86.1% 90.0%
3975352 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.70 63.0 5.81e-01 96.7% 98.7%
4008544 5084.6.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.69 63.0 5.04e-01 97.5% 100.0%
5081121 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.69 63.0 5.54e-01 97.5% 99.4%
3967227 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.68 63.0 5.49e-01 100.0% 72.2%
3971633 5084.6.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.67 59.0 4.68e-01 95.9% 98.4%
4039744 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.64 59.0 4.27e-01 100.0% 89.5%
3165950 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.63 55.0 4.26e-01 97.5% 55.0%
3839274 5084.5.1.25 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › HP_OMP_2 0.61 51.0 3.40e-01 90.2% 95.8%
200993 5084.9.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Lipid A deacylase LpxR › Lipid A deacylase LpxR › LpxR 0.61 52.0 4.00e-01 95.9% 99.7%
3983528 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.60 53.0 4.20e-01 95.9% 80.6%
3387368 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.60 54.0 4.18e-01 99.2% 97.3%
2321076 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.58 52.0 3.80e-01 95.9% 99.4%
3969607 5084.1.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.58 52.0 3.86e-01 98.4% 99.4%
135742 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 50.0 4.85e-01 92.6% 90.6%
4603160 5084.5.4.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › YaiO 0.58 51.0 4.16e-01 97.5% 100.0%
5041496 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 42.0 3.33e-01 77.9% 95.3%
3974567 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 50.0 3.92e-01 95.1% 94.3%
4064323 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.57 49.0 3.39e-01 92.6% 93.7%
4301684 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.57 51.0 4.46e-01 97.5% 86.3%
2491331 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 52.0 4.70e-01 99.2% 93.3%
4582939 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.56 51.0 3.73e-01 98.4% 94.8%
3942118 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.56 49.0 3.33e-01 95.1% 96.2%
4622159 5084.5.1.35 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_2 0.54 47.0 3.41e-01 93.4% 92.4%
2392665 5084.1.1.12 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Porin_7 0.54 38.0 3.92e-01 72.1% 80.2%
4622073 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.53 48.0 3.51e-01 97.5% 79.1%
4304754 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.53 46.0 3.54e-01 97.5% 90.2%
4188949 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.52 42.0 2.77e-01 87.7% 92.2%
3487050 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 38.0 2.92e-01 77.0% 88.5%
3473012 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.51 38.0 2.84e-01 76.2% 89.8%
4679157 5084.5.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.51 45.0 3.16e-01 94.3% 66.7%
4417314 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.51 44.0 2.91e-01 97.5% 95.7%
1760440 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.50 44.0 2.90e-01 95.1% 99.2%