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NC_042095.1__YP_009621320.1__FDJ20_gp037__00037
Bact-VirNC_042095.1__YP_009621320.1__FDJ20_gp037__00037
Identity
- Accession:
- NC_042095 ↗
- Kingdom:
- phage
Quality
68.9
mean pLDDT
Taxonomy
TaxID: 2570301
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 573-658
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.68 | 55.0 | 3.49e-01 | 87.2% | 76.2% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.67 | 43.0 | 4.18e-01 | 81.4% | 58.5% |
| 2gr7A00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.67 | 48.0 | 4.59e-01 | 76.7% | 64.4% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.65 | 42.0 | 4.81e-01 | 70.9% | 88.9% |
| 4qhzA00 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.64 | 48.0 | 3.50e-01 | 80.2% | 66.8% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 46.0 | 3.90e-01 | 76.7% | 76.9% |
| 8ainB01 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.63 | 49.0 | 4.65e-01 | 86.0% | 69.5% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.62 | 52.0 | 4.03e-01 | 93.0% | 57.3% |
| 4j8tA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 50.0 | 4.40e-01 | 89.5% | 96.9% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 55.0 | 4.53e-01 | 98.8% | 61.8% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.61 | 50.0 | 3.43e-01 | 90.7% | 34.1% |
| 2b1xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 50.0 | 4.04e-01 | 89.5% | 89.8% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 47.0 | 4.11e-01 | 86.0% | 91.8% |
| 4gq1A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 51.0 | 3.40e-01 | 94.2% | 41.8% |
| 7c38B01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.59 | 48.0 | 3.33e-01 | 90.7% | 32.0% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 49.0 | 3.10e-01 | 91.9% | 37.5% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 52.0 | 4.32e-01 | 97.7% | 64.1% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 44.0 | 4.00e-01 | 97.7% | 58.6% |
| 4b0bB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 43.0 | 3.50e-01 | 77.9% | 94.7% |
| 1b9vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.59 | 48.0 | 3.18e-01 | 91.9% | 34.4% |
| 1q6wG00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 40.0 | 3.40e-01 | 72.1% | 95.3% |
| 6x05A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 48.0 | 3.19e-01 | 91.9% | 24.9% |
| 3d4eA02 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.58 | 40.0 | 4.16e-01 | 91.9% | 78.2% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 49.0 | 4.19e-01 | 95.3% | 63.9% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.57 | 47.0 | 3.70e-01 | 93.0% | 66.5% |
| 1n9eA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.57 | 47.0 | 2.95e-01 | 93.0% | 79.5% |
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 43.0 | 3.93e-01 | 86.0% | 91.9% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 2.92e-01 | 91.9% | 40.0% |
| 3dxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 3.83e-01 | 81.4% | 96.6% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 41.0 | 3.65e-01 | 80.2% | 94.7% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.55 | 44.0 | 3.73e-01 | 88.4% | 51.4% |
| 1l7aA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 48.0 | 3.33e-01 | 100.0% | 67.3% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.55 | 40.0 | 4.05e-01 | 76.7% | 81.0% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.55 | 45.0 | 2.88e-01 | 95.3% | 72.5% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.51e-01 | 79.1% | 86.3% |
| 5tkyA04 | 2.60.34.10 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 | 0.54 | 38.0 | 3.53e-01 | 75.6% | 93.1% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.54 | 44.0 | 3.92e-01 | 89.5% | 91.7% |
| 3byqA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.52 | 42.0 | 3.35e-01 | 91.9% | 66.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2452960 | 520.1.1.0 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related | 0.83 | 68.0 | 6.68e-01 | 86.0% | 94.4% |
| 3973700 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.82 | 77.0 | 7.43e-01 | 100.0% | 91.6% |
| 5033471 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.69 | 51.0 | 4.80e-01 | 86.0% | 63.8% |
| 4337887 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.66 | 49.0 | 3.76e-01 | 77.9% | 62.6% |
| 4464658 | 274.1.1.59 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG | 0.65 | 50.0 | 4.54e-01 | 86.0% | 61.4% |
| 3891230 | 5.1.5.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WDR93 | 0.64 | 54.0 | 3.33e-01 | 91.9% | 20.0% |
| 3703649 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.64 | 48.0 | 5.01e-01 | 88.4% | 85.0% |
| 3236031 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.63 | 44.0 | 3.74e-01 | 72.1% | 60.7% |
| 3938509 | 5.1.4.304 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd | 0.63 | 52.0 | 3.55e-01 | 90.7% | 30.8% |
| 3708657 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 48.0 | 4.20e-01 | 82.6% | 97.0% |
| 3967063 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.63 | 56.0 | 3.91e-01 | 98.8% | 92.2% |
| 3224154 | 5.1.4.304 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd | 0.63 | 52.0 | 3.48e-01 | 90.7% | 29.3% |
| 3484308 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.63 | 53.0 | 3.32e-01 | 93.0% | 35.3% |
| 3991341 | 5.1.4.304 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd | 0.62 | 52.0 | 3.13e-01 | 91.9% | 15.7% |
| 420412 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.62 | 49.0 | 4.21e-01 | 86.0% | 60.7% |
| 3707862 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.62 | 48.0 | 4.98e-01 | 88.4% | 88.7% |
| 1310956 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 51.0 | 3.42e-01 | 91.9% | 31.8% |
| 3824851 | 5084.5.1.43 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF30985 | 0.61 | 54.0 | 4.26e-01 | 94.2% | 60.6% |
| 3971642 | 5084.5.1.22 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 | 0.61 | 55.0 | 3.80e-01 | 100.0% | 49.1% |
| 3254303 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.60 | 44.0 | 3.45e-01 | 77.9% | 72.6% |
| 3260630 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.60 | 44.0 | 3.50e-01 | 77.9% | 73.9% |
| 3188579 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.59 | 43.0 | 3.15e-01 | 76.7% | 71.7% |
| 3972254 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.59 | 40.0 | 3.39e-01 | 70.9% | 88.0% |
| 4288637 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.59 | 42.0 | 3.50e-01 | 76.7% | 84.4% |
| 3613791 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.59 | 43.0 | 3.63e-01 | 76.7% | 82.1% |
| 1692382 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.58 | 40.0 | 3.39e-01 | 72.1% | 85.2% |
| 3649685 | 5.1.4.317 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CAF1C_H4-bd, Beta-prop_NOL10_N | 0.58 | 49.0 | 3.18e-01 | 94.2% | 34.9% |
| 3244141 | 5.1.4.320 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 | 0.58 | 48.0 | 3.18e-01 | 91.9% | 25.2% |
| 3252422 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.58 | 48.0 | 3.79e-01 | 93.0% | 53.7% |
| 3972681 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.57 | 41.0 | 4.04e-01 | 76.7% | 83.0% |
| 3998439 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.56 | 46.0 | 4.53e-01 | 90.7% | 81.1% |
| 3453399 | 867.1.1.3 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › RCC_reductase | 0.56 | 44.0 | 3.29e-01 | 84.9% | 56.7% |
| 4383447 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.55 | 46.0 | 2.94e-01 | 91.9% | 34.2% |
| 4418386 | 3775.1.1.2 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › PorA | 0.55 | 47.0 | 3.34e-01 | 98.8% | 52.0% |
| 4964191 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.55 | 47.0 | 3.63e-01 | 98.8% | 92.4% |
| 1388524 | 243.17.1.1 ↗ | a+b two layers › Cystatin-like › C-terminal domain of PatG › C-terminal domain of PatG › PatG_C | 0.54 | 43.0 | 3.82e-01 | 88.4% | 76.2% |
| 3548439 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.54 | 37.0 | 3.05e-01 | 70.9% | 76.8% |
| 3425526 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.53 | 44.0 | 3.52e-01 | 93.0% | 48.1% |
| 3509244 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.53 | 38.0 | 3.07e-01 | 75.6% | 78.8% |
| 4044884 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.52 | 42.0 | 3.28e-01 | 87.2% | 71.4% |
| 4466226 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.52 | 44.0 | 4.15e-01 | 94.2% | 90.5% |
| 3774570 | 11.1.1.934 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C | 0.52 | 36.0 | 2.83e-01 | 72.1% | 62.2% |
D2
high
residues 672-756
D3
high
residues 766-892
Domain cluster:
rep: NC_021532.1__YP_008125992.1__M610_gp021__00021__D1092-1234
D4
medium
residues 61-160
Domain cluster:
representative
D5
medium
residues 161-221
Domain cluster:
representative
D6
medium
residues 300-400
D7
medium
residues 401-473
Domain cluster:
rep: NC_048776.1__YP_009847622.1__HWC32_gp141__00141__D54-114