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NC_042098.1__YP_009621750.1__FDJ23_gp009__00009
Bact-VirNC_042098.1__YP_009621750.1__FDJ23_gp009__00009
Identity
- Accession:
- NC_042098 ↗
- Kingdom:
- phage
Quality
64.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Agricanvirus›
Erwinia_phage_vB_EamM_Desertfox
TaxID: 2060127
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-67
D2
high
residues 70-144
D3
high
residues 180-271
Domain cluster:
rep: MW879341.1__QXO10940.1__pEaSNUABM54_00114__00114__D183-275
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25613.2 best | DUF7941 | 35.8 | 8.40e-09 | 98.9% | 28.8% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hdlA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 34.0 | 3.63e-01 | 76.1% | 61.0% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.60 | 34.0 | 4.17e-01 | 90.2% | 98.0% |
| 1n2bB02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.56 | 39.0 | 3.76e-01 | 100.0% | 62.5% |
| 7z7vC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.55 | 38.0 | 3.46e-01 | 100.0% | 51.2% |
| 7v6bA01 | 3.30.160.380 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain | 0.55 | 39.0 | 3.65e-01 | 73.9% | 61.4% |
| 2ke9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 34.0 | 3.83e-01 | 88.0% | 86.6% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.49e-01 | 84.8% | 64.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4489855 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.70 | 42.0 | 4.50e-01 | 95.7% | 69.6% |
| 3918299 | 4.1.1.376 ↗ | beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th | 0.66 | 38.0 | 4.32e-01 | 92.4% | 75.7% |
| 4012857 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 34.0 | 3.81e-01 | 71.7% | 67.1% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 37.0 | 4.30e-01 | 95.7% | 83.1% |
| 3910482 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.61 | 32.0 | 3.74e-01 | 97.8% | 70.8% |
| 3645842 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.60 | 37.0 | 4.00e-01 | 89.1% | 71.2% |
| 3234035 | 4.1.1.60 ↗ | beta barrels › SH3 › SH3 › SH3 › YccV-like | 0.59 | 42.0 | 3.91e-01 | 96.7% | 58.3% |
| 5079018 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 40.0 | 4.20e-01 | 94.6% | 83.5% |
| 3493244 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.54 | 32.0 | 2.25e-01 | 98.9% | 16.7% |
| 3175156 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.54 | 36.0 | 4.02e-01 | 96.7% | 91.4% |
| 5006669 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.51 | 33.0 | 3.20e-01 | 100.0% | 56.4% |
| 3934954 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 40.0 | 2.73e-01 | 91.3% | 47.7% |