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NC_042098.1__YP_009621763.1__FDJ23_gp022__00022

Bact-Vir

NC_042098.1__YP_009621763.1__FDJ23_gp022__00022

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.00e-01 70.0% 74.1%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 39.0 4.48e-01 75.0% 94.9%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 38.0 3.81e-01 78.3% 63.1%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 40.0 3.76e-01 80.0% 58.1%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.45e-01 81.7% 100.0%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 36.0 3.98e-01 75.0% 88.1%
1y14D02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 47.0 4.31e-01 100.0% 96.6%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 38.0 3.70e-01 78.3% 61.4%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 44.0 3.54e-01 88.3% 89.9%
2zyqA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 39.0 3.16e-01 78.3% 89.4%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 36.0 3.57e-01 78.3% 61.8%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 35.0 3.01e-01 70.0% 39.0%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 41.0 4.27e-01 100.0% 100.0%
3g12B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.51e-01 90.0% 92.9%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.53 35.0 3.09e-01 70.0% 68.8%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 38.0 2.96e-01 80.0% 63.8%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 44.0 3.55e-01 100.0% 71.3%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.13e-01 93.3% 59.1%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 3.39e-01 96.7% 46.6%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.75e-01 90.0% 36.1%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 36.0 2.87e-01 76.7% 48.6%
4nn2B00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 38.0 3.19e-01 85.0% 84.7%
2x24A02 2.40.460.10 Mainly Beta › Beta Barrel › ClpP/crotonase fold › Biotin dependent carboxylase carboxyltransferase 0.51 35.0 3.44e-01 73.3% 98.5%
7o85C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.90e-01 93.3% 93.5%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.51 45.0 3.56e-01 95.0% 98.3%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.28e-01 95.0% 47.9%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 35.0 3.56e-01 76.7% 77.2%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.50 38.0 2.58e-01 81.7% 79.1%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 34.0 3.21e-01 100.0% 56.6%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.50 35.0 2.77e-01 75.0% 61.3%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.22e-01 95.0% 51.8%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3709555 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 55.0 5.71e-01 95.0% 92.7%
4990202 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 43.0 4.69e-01 70.0% 98.0%
3225875 284.2.1.1 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.64 45.0 2.78e-01 75.0% 20.0%
3283166 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.63 52.0 3.37e-01 91.7% 56.7%
4026718 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.62 44.0 4.01e-01 73.3% 83.7%
4023460 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 4.09e-01 73.3% 89.3%
3629581 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.62 45.0 2.94e-01 80.0% 20.0%
3531422 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.61 46.0 3.17e-01 83.3% 37.2%
4968342 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 41.0 3.50e-01 71.7% 57.1%
3417161 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.61 42.0 2.35e-01 73.3% 12.8%
3518858 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 40.0 3.72e-01 70.0% 86.3%
3929123 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.60 40.0 2.55e-01 71.7% 28.4%
3618501 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 41.0 3.70e-01 78.3% 51.8%
4076677 101.1.2.63 ↗ alpha arrays › HTH › HTH › winged helix domain › FaeA 0.59 40.0 3.73e-01 70.0% 81.3%
3939202 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 39.0 3.91e-01 85.0% 68.3%
3383010 4.1.1.299 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.58 36.0 2.89e-01 83.3% 29.2%
3822561 284.2.1.1 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.58 40.0 3.45e-01 73.3% 90.0%
3834882 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.58 40.0 2.52e-01 73.3% 31.9%
3361094 284.2.1.1 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.58 40.0 2.53e-01 73.3% 30.8%
4003164 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.58 43.0 2.76e-01 83.3% 24.7%
4227815 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.58 39.0 2.50e-01 73.3% 31.1%
3509919 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.57 41.0 2.80e-01 80.0% 21.5%
3602420 2008.1.1.15 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.57 46.0 3.04e-01 91.7% 85.3%
2132278 2004.1.1.99 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N 0.56 43.0 2.96e-01 83.3% 51.5%
3199701 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.56 41.0 2.68e-01 83.3% 40.0%
3476114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.56 45.0 2.80e-01 93.3% 55.6%
4261505 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.56 37.0 3.71e-01 78.3% 64.6%
5006277 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 35.0 3.76e-01 73.3% 79.6%
3829628 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 38.0 3.53e-01 73.3% 96.2%
3928114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.55 44.0 2.69e-01 93.3% 60.0%
3654794 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.55 45.0 2.73e-01 98.3% 88.4%
4226159 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 39.0 3.71e-01 78.3% 68.0%
3581626 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 40.0 3.25e-01 80.0% 45.0%
4193772 331.1.1.13 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.54 40.0 3.68e-01 83.3% 83.5%
3230169 101.1.1.264 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.54 38.0 3.17e-01 78.3% 45.8%
3967404 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 36.0 3.47e-01 75.0% 60.0%
3602195 1057.1.1.1 ↗ a+b two layers › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › PI-TkoII_IV 0.53 43.0 3.38e-01 95.0% 58.6%
2594390 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.53 38.0 3.63e-01 78.3% 65.3%
3602284 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.85e-01 91.7% 75.3%
3520514 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.52 36.0 2.24e-01 73.3% 18.9%
4500525 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.52 36.0 3.74e-01 73.3% 100.0%
3781143 4012.4.1.0 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.51 34.0 3.71e-01 93.3% 91.1%
5072613 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.93e-01 91.7% 85.0%
4934328 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.14e-01 95.0% 90.0%
3165551 375.1.1.38 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Topo_Zn_Ribbon 0.50 39.0 4.04e-01 86.7% 91.4%