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NC_042098.1__YP_009621775.1__FDJ23_gp034__00034

Bact-Vir

NC_042098.1__YP_009621775.1__FDJ23_gp034__00034

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-79
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.85 79.0 6.35e-01 100.0% 95.5%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.83 60.0 4.33e-01 74.3% 80.2%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 59.0 4.67e-01 79.7% 87.3%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.75 57.0 4.53e-01 79.7% 89.6%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.75 67.0 6.02e-01 100.0% 73.0%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 55.0 4.49e-01 79.7% 90.4%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.70 61.0 5.19e-01 100.0% 91.3%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 52.0 4.22e-01 81.1% 56.8%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 44.0 4.80e-01 71.6% 80.6%
3cskA02 3.30.540.30 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.67 59.0 4.63e-01 100.0% 87.7%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 49.0 4.10e-01 79.7% 92.0%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.67 58.0 4.60e-01 100.0% 56.9%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.67 58.0 4.81e-01 100.0% 60.4%
2cfuA02 1.25.40.880 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Alkyl sulfatase, dimerisation domain 0.66 50.0 4.06e-01 81.1% 95.0%
6humG01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.66 49.0 3.88e-01 81.1% 41.9%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.65 51.0 2.91e-01 83.8% 32.7%
2y8nA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.65 51.0 2.86e-01 83.8% 34.1%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 51.0 3.92e-01 89.2% 71.1%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 48.0 4.47e-01 83.8% 69.1%
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.62 46.0 3.65e-01 81.1% 38.0%
4l3tA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.62 47.0 3.36e-01 82.4% 59.7%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 45.0 3.61e-01 79.7% 60.5%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 46.0 3.41e-01 82.4% 60.2%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.59 50.0 3.70e-01 95.9% 53.5%
2kc7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 41.0 3.80e-01 78.4% 55.6%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.59 40.0 3.84e-01 94.6% 59.6%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.58 46.0 4.08e-01 85.1% 78.3%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 45.0 3.70e-01 86.5% 91.7%
3qnfA04 1.10.3480.20 Mainly Alpha › Orthogonal Bundle › TorD-like › 0.57 45.0 3.44e-01 86.5% 54.2%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 43.0 3.81e-01 81.1% 97.2%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 39.0 3.31e-01 74.3% 46.7%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 4.19e-01 94.6% 94.6%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.55 40.0 2.77e-01 79.7% 76.7%
8befJ01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.55 47.0 3.67e-01 100.0% 64.1%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 45.0 3.80e-01 93.2% 56.7%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 46.0 4.12e-01 100.0% 92.7%
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 39.0 2.94e-01 78.4% 39.1%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.51 39.0 4.06e-01 91.9% 91.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943886 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.78 68.0 5.86e-01 100.0% 61.7%
4567796 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.78 55.0 5.53e-01 73.0% 77.3%
4945959 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 55.0 3.91e-01 74.3% 30.0%
5059052 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.77 61.0 4.71e-01 83.8% 91.3%
3268622 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.75 56.0 4.98e-01 79.7% 66.7%
3968904 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 47.0 4.34e-01 74.3% 50.5%
3272556 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.74 56.0 4.06e-01 79.7% 35.9%
5012651 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.74 56.0 5.35e-01 79.7% 81.2%
4999686 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.73 55.0 5.53e-01 79.7% 90.7%
3977558 639.2.1.3 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM 0.73 46.0 5.23e-01 71.6% 85.5%
3792916 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.73 53.0 5.35e-01 75.7% 81.3%
4933335 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.73 53.0 5.15e-01 75.7% 80.0%
4947260 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.73 53.0 5.21e-01 77.0% 80.0%
4972182 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.72 50.0 5.13e-01 71.6% 88.6%
5048081 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.72 54.0 5.45e-01 81.1% 90.7%
4577904 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 56.0 5.52e-01 85.1% 98.8%
3186889 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 53.0 4.93e-01 79.7% 70.5%
3480265 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 50.0 4.87e-01 73.0% 81.2%
5076876 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 49.0 4.81e-01 71.6% 77.5%
3709854 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.71 47.0 5.37e-01 79.7% 92.7%
3267491 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 50.0 5.17e-01 74.3% 94.3%
4002826 604.12.1.9 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.71 53.0 4.78e-01 79.7% 68.0%
3270441 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 53.0 5.29e-01 79.7% 88.0%
3225484 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 50.0 5.16e-01 75.7% 90.0%
3743018 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 48.0 5.14e-01 71.6% 93.8%
5072449 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 52.0 4.92e-01 79.7% 74.4%
3883622 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 52.0 5.27e-01 79.7% 86.7%
3884438 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 50.0 4.90e-01 75.7% 78.8%
3402110 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 51.0 4.73e-01 78.4% 70.5%
3731082 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 49.0 4.93e-01 74.3% 81.3%
4978312 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 49.0 5.08e-01 74.3% 88.6%
4159500 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 51.0 4.92e-01 78.4% 78.8%
3879426 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 52.0 5.09e-01 81.1% 80.7%
3558834 604.12.1.6 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › NRBF2_MIT 0.69 50.0 4.70e-01 77.0% 72.2%
3497029 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 56.0 5.13e-01 90.5% 91.0%
3325799 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.68 59.0 5.04e-01 100.0% 84.0%
3704286 604.12.1.8 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.68 49.0 4.50e-01 77.0% 63.0%
4977808 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 51.0 5.24e-01 81.1% 94.3%
5000553 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 46.0 4.77e-01 70.3% 84.3%
3510771 610.4.1.0 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.68 50.0 4.54e-01 78.4% 84.0%
3708647 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.68 47.0 3.32e-01 71.6% 42.8%
3418094 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.67 47.0 4.62e-01 73.0% 80.0%
3608758 604.12.1.8 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.67 51.0 5.01e-01 82.4% 83.7%
3686751 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.67 48.0 4.69e-01 74.3% 77.5%
3284904 4070.1.1.4 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.67 59.0 4.26e-01 100.0% 60.9%
3252144 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 47.0 4.88e-01 77.0% 91.4%
3358885 604.12.1.8 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.65 46.0 4.55e-01 75.7% 76.2%
3770100 604.12.1.8 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.65 48.0 4.58e-01 81.1% 70.0%
3773235 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.64 49.0 4.62e-01 81.1% 74.4%
3705984 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 48.0 3.32e-01 82.4% 44.6%
3507780 604.12.1.8 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.63 47.0 4.50e-01 78.4% 78.8%
3856583 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.63 46.0 4.38e-01 81.1% 65.6%
3267859 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.61 47.0 4.47e-01 85.1% 88.9%
3896722 622.6.1.0 ↗ alpha bundles › YvfG-like › NLR family member X1 C-terminal domain › NLR family member X1 C-terminal domain 0.58 44.0 2.90e-01 83.8% 19.4%
3720909 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.57 41.0 3.23e-01 77.0% 33.5%
3719150 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 43.0 2.80e-01 81.1% 31.2%
3402139 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.56 41.0 3.99e-01 79.7% 82.4%
3186555 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.50 44.0 2.64e-01 95.9% 16.5%