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NC_042098.1__YP_009621780.1__FDJ23_gp039__00039

Bact-Vir

NC_042098.1__YP_009621780.1__FDJ23_gp039__00039

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-108
PDB
Domain cluster: rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00670__D5-100
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.91 84.0 8.21e-01 100.0% 89.6%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.74 68.0 6.43e-01 100.0% 87.2%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 43.0 5.25e-01 91.9% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 41.0 4.97e-01 87.9% 100.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 39.0 4.82e-01 86.9% 93.2%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.65 42.0 4.36e-01 94.9% 69.5%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 38.0 4.53e-01 87.9% 90.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.64 41.0 4.78e-01 90.9% 97.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 36.0 4.46e-01 85.9% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.67e-01 93.9% 84.3%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 35.0 4.08e-01 79.8% 81.5%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 36.0 4.29e-01 88.9% 95.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 41.0 4.52e-01 81.8% 93.3%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 50.0 4.49e-01 93.9% 70.9%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 37.0 4.34e-01 85.9% 98.4%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 30.0 3.64e-01 70.7% 78.1%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.86e-01 91.9% 61.4%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 34.0 3.37e-01 77.8% 62.4%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.50 30.0 3.40e-01 85.9% 81.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
605 4.1.2.1 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.91 84.0 8.21e-01 100.0% 89.6%
165392 4.1.2.1 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.74 69.0 6.42e-01 100.0% 84.2%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.73 41.0 5.24e-01 90.9% 100.0%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 42.0 5.02e-01 89.9% 89.1%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.72 41.0 5.13e-01 90.9% 100.0%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 43.0 5.30e-01 96.0% 100.0%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 47.0 5.39e-01 91.9% 94.3%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 48.0 5.40e-01 91.9% 93.2%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 44.0 5.35e-01 91.9% 98.4%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.39e-01 91.9% 93.2%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 46.0 4.87e-01 93.9% 73.3%
4270910 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 46.0 5.32e-01 91.9% 94.3%
4335951 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 47.0 5.30e-01 91.9% 91.8%
3486326 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 40.0 5.01e-01 88.9% 100.0%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.70 43.0 5.19e-01 90.9% 100.0%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 43.0 4.66e-01 91.9% 72.9%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.14e-01 91.9% 78.9%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 39.0 4.55e-01 86.9% 78.6%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.69 39.0 4.86e-01 85.9% 100.0%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 49.0 5.07e-01 92.9% 81.1%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 40.0 4.82e-01 85.9% 95.0%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 43.0 5.19e-01 88.9% 100.0%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.96e-01 89.9% 100.0%
4937705 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.65 43.0 4.51e-01 89.9% 73.3%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.65 44.0 4.96e-01 92.9% 92.0%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.65 45.0 4.49e-01 92.9% 70.0%
4284598 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.65 42.0 4.39e-01 88.9% 72.2%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 4.43e-01 89.9% 73.3%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 38.0 4.66e-01 71.7% 100.0%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 44.0 4.39e-01 92.9% 69.0%
4946972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.35e-01 88.9% 72.2%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 41.0 4.62e-01 90.9% 87.8%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.63e-01 89.9% 88.0%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 40.0 4.46e-01 88.9% 85.3%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 42.0 4.33e-01 89.9% 74.4%
5050368 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.62 45.0 4.52e-01 97.0% 75.5%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 45.0 4.53e-01 93.9% 76.0%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 43.0 4.56e-01 84.8% 84.7%
3593474 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 52.0 4.09e-01 93.9% 48.6%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.59 46.0 4.60e-01 93.9% 81.0%
3743973 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 40.0 4.34e-01 78.8% 90.0%
3701631 220.1.1.200 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_30 0.56 38.0 3.60e-01 70.7% 79.2%
3509362 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.56 38.0 3.92e-01 79.8% 74.5%
3381618 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 37.0 3.44e-01 71.7% 75.2%
4276756 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.53 42.0 3.70e-01 87.9% 78.7%
3842361 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.52 43.0 4.36e-01 93.9% 95.8%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.52 44.0 4.32e-01 96.0% 90.0%
4340770 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.51 41.0 4.18e-01 92.9% 92.6%
3671194 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.60e-01 73.7% 91.4%
3250597 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 37.0 3.66e-01 84.8% 69.1%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.51 44.0 4.28e-01 97.0% 90.9%
3942943 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.51 41.0 3.07e-01 86.9% 89.4%
4944386 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.51e-01 76.8% 66.4%