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NC_042098.1__YP_009621801.1__FDJ23_gp060__00060
Bact-VirNC_042098.1__YP_009621801.1__FDJ23_gp060__00060
Identity
- Accession:
- NC_042098 ↗
- Kingdom:
- phage
Quality
59.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Agricanvirus›
Erwinia_phage_vB_EamM_Desertfox
TaxID: 2060127
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-48
D2
high
residues 71-170
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 45.0 | 3.46e-01 | 79.0% | 72.6% |
| 5t5lA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 43.0 | 3.38e-01 | 81.0% | 73.8% |
| 4dokA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.57 | 42.0 | 3.68e-01 | 78.0% | 88.4% |
| 3vv1A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 42.0 | 3.82e-01 | 79.0% | 83.0% |
| 1ux6A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 44.0 | 3.52e-01 | 83.0% | 79.8% |
| 2zgoA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 44.0 | 3.76e-01 | 85.0% | 82.6% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 45.0 | 3.17e-01 | 89.0% | 39.6% |
| 3mepA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 42.0 | 3.53e-01 | 83.0% | 72.1% |
| 5gm0A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 43.0 | 3.87e-01 | 87.0% | 85.8% |
| 1uswA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 38.0 | 2.81e-01 | 72.0% | 70.8% |
| 6qk7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 43.0 | 2.97e-01 | 86.0% | 37.2% |
| 1f0cA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 41.0 | 3.89e-01 | 99.0% | 69.5% |
| 2rgnB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 37.0 | 3.47e-01 | 72.0% | 80.5% |
| 3lhoA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.52 | 36.0 | 2.75e-01 | 72.0% | 76.6% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 36.0 | 3.68e-01 | 94.0% | 75.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027341 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.66 | 46.0 | 3.88e-01 | 72.0% | 44.4% |
| 4538433 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.64 | 45.0 | 3.52e-01 | 74.0% | 87.7% |
| 3940929 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.64 | 50.0 | 3.39e-01 | 86.0% | 34.7% |
| 3576498 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 44.0 | 4.71e-01 | 71.0% | 94.1% |
| 3601509 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 48.0 | 3.16e-01 | 88.0% | 61.4% |
| 3503503 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.59 | 40.0 | 3.57e-01 | 70.0% | 97.9% |
| 4939450 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.58 | 42.0 | 4.26e-01 | 75.0% | 93.0% |
| 4367085 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 36.0 | 3.91e-01 | 82.0% | 75.3% |
| 3998600 | 5.1.2.46 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_IFT140_1st | 0.57 | 42.0 | 3.70e-01 | 77.0% | 74.3% |
| 3834272 | 5.1.5.96 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 | 0.57 | 46.0 | 3.28e-01 | 87.0% | 61.7% |
| 3702738 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.57 | 44.0 | 3.65e-01 | 83.0% | 79.4% |
| 3591269 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.55 | 42.0 | 2.93e-01 | 80.0% | 35.3% |
| 3788776 | 5.1.4.38 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 | 0.55 | 43.0 | 3.05e-01 | 86.0% | 57.6% |
| 4927832 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 38.0 | 3.72e-01 | 72.0% | 97.3% |
| 3947082 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 45.0 | 4.71e-01 | 89.0% | 100.0% |
| 3941130 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.54 | 41.0 | 2.88e-01 | 82.0% | 50.6% |
| 3597540 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 43.0 | 2.98e-01 | 88.0% | 40.0% |
| 3257844 | 71.1.1.16 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa | 0.52 | 41.0 | 3.29e-01 | 84.0% | 87.5% |
| 3791357 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.52 | 41.0 | 3.47e-01 | 83.0% | 93.3% |
| 4964119 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.52 | 36.0 | 3.20e-01 | 73.0% | 95.6% |
| 3547439 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.52 | 38.0 | 2.80e-01 | 98.0% | 28.7% |
| 3950065 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.52 | 37.0 | 3.26e-01 | 73.0% | 77.2% |
| 3509392 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 40.0 | 3.49e-01 | 84.0% | 74.4% |
| 3628378 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.52 | 41.0 | 3.47e-01 | 85.0% | 95.2% |
| 4073600 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.50 | 39.0 | 3.83e-01 | 84.0% | 100.0% |
D3
medium
residues 175-246