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NC_042098.1__YP_009621807.1__FDJ23_gp066__00066

Bact-Vir

Identity

Accession:: NC_042098 ↗
Kingdom:: phage

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-127

PDB

D2 high residues 132-250

PDB

Domain cluster: rep: MW749006.1__QXN70541.1__AGENTSMITH_137__00135__D102-243

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25187.2 best	Acb3	39.2	9.40e-10	100.0%	53.2%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5aj3E01	3.30.230.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 ›	0.67	42.0	4.92e-01	77.3%	91.4%
1gkuB07	2.60.510.20	Mainly Beta › Sandwich › EV matrix protein fold ›	0.65	37.0	3.93e-01	83.2%	63.7%
5azsA02	2.20.200.10	Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.61	30.0	3.48e-01	74.8%	63.9%
1ae2A00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.61	34.0	3.89e-01	71.4%	74.4%
3gwrB00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.59	32.0	3.19e-01	88.2%	48.8%
4k7rA02	2.20.200.10	Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.55	32.0	3.95e-01	81.5%	90.9%
4gn2A00	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.53	47.0	3.73e-01	96.6%	86.3%
2r5rA00	3.10.270.10	Alpha Beta › Roll › Urate Oxidase › Urate Oxidase;	0.52	46.0	3.68e-01	99.2%	69.1%
4mp8A01	3.30.1780.10	Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1	0.52	44.0	3.99e-01	91.6%	68.3%
2rckA01	3.15.10.30	Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain	0.51	41.0	3.45e-01	87.4%	85.3%
3voqA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.51	37.0	3.75e-01	91.6%	75.9%
4ckmB00	2.170.210.20	Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain	0.50	45.0	4.25e-01	96.6%	96.5%
4ccvA00	3.10.450.10	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.50	38.0	3.94e-01	95.8%	84.3%
4w78G00	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.50	40.0	3.61e-01	84.9%	98.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3599565	274.1.1.0 ↗	a+b two layers › Pili subunits › Pili subunits › Pili subunits	0.66	41.0	4.81e-01	78.2%	91.3%
3890886	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.61	37.0	4.42e-01	87.4%	90.0%
3646327	9.1.1.0 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins	0.60	40.0	3.61e-01	87.4%	50.6%
3377619	881.1.1.1 ↗	a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP	0.57	42.0	3.64e-01	100.0%	49.2%
3683559	212.1.1.0 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like	0.53	40.0	3.28e-01	79.0%	44.1%
167189	883.1.1.3 ↗	a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP	0.53	41.0	3.44e-01	85.7%	86.9%
4124402	7503.1.1.17 ↗	a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF26521	0.52	42.0	3.96e-01	87.4%	87.6%
3514245	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.51	40.0	4.06e-01	95.8%	85.2%