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NC_042098.1__YP_009621820.1__FDJ23_gp079__00079

Bact-Vir

NC_042098.1__YP_009621820.1__FDJ23_gp079__00079

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-180
PDB
Domain cluster: rep: MW845760.1__QXO10029.1__pEaSNUABM37_00068__00068__D57-172
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.63 34.0 4.53e-01 83.1% 97.2%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 33.0 3.63e-01 77.7% 68.5%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 22.0 3.38e-01 86.2% 91.8%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 4.07e-01 74.6% 89.3%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 23.0 3.12e-01 84.6% 76.1%
4fdaA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 38.0 3.20e-01 75.4% 91.8%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 32.0 3.35e-01 93.1% 63.9%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 30.0 3.47e-01 90.8% 76.8%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 3.59e-01 71.5% 93.5%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 38.0 2.72e-01 75.4% 87.0%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 27.0 3.27e-01 88.5% 76.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 35.0 3.60e-01 70.8% 94.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 35.0 3.53e-01 70.8% 94.0%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.51 36.0 3.01e-01 73.8% 63.2%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 44.0 3.01e-01 96.2% 44.7%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 30.0 3.44e-01 78.5% 78.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591940 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.68 34.0 2.98e-01 100.0% 32.1%
5044389 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.67 25.0 3.89e-01 82.3% 88.0%
4931347 5001.1.1.12 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Heliorhodopsin 0.65 50.0 3.99e-01 81.5% 98.9%
3279508 283.1.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.64 46.0 4.64e-01 93.8% 71.9%
3209857 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.57 49.0 4.43e-01 96.2% 100.0%
5078248 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 24.0 3.23e-01 84.6% 72.9%
4880118 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 24.0 3.12e-01 84.6% 71.4%
1318715 243.16.1.1 ↗ a+b two layers › Cystatin-like › hypothetical protein CLOLEP_02462 › hypothetical protein CLOLEP_02462 › DUF6836 0.53 37.0 3.97e-01 72.3% 94.7%
5064976 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 37.0 3.48e-01 70.8% 88.1%
3224246 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 30.0 3.36e-01 86.9% 71.2%
4079885 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.51 36.0 4.12e-01 72.3% 100.0%
3392308 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.51 28.0 3.24e-01 85.4% 71.6%
5009633 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 30.0 3.49e-01 72.3% 83.3%
D2 medium residues 1-50
PDB
Domain cluster: representative