←Back to structures

NC_042098.1__YP_009621839.1__FDJ23_gp098__00098

Bact-Vir

NC_042098.1__YP_009621839.1__FDJ23_gp098__00098

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-125
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.67 54.0 4.49e-01 86.4% 80.3%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.62 46.0 4.21e-01 81.8% 57.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.61 49.0 4.13e-01 85.5% 68.7%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 38.0 4.29e-01 100.0% 84.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.61 49.0 4.57e-01 87.3% 99.3%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.61 31.0 4.13e-01 79.1% 94.7%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.60 42.0 4.79e-01 75.5% 98.8%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 42.0 3.87e-01 82.7% 56.2%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 44.0 3.73e-01 80.9% 88.5%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.58 39.0 4.11e-01 76.4% 76.8%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 39.0 3.99e-01 82.7% 72.6%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.57 41.0 3.68e-01 76.4% 70.7%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.68e-01 97.3% 96.0%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 49.0 4.67e-01 100.0% 93.2%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 49.0 3.44e-01 100.0% 46.7%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.45e-01 88.2% 88.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 4.89e-01 100.0% 100.0%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 34.0 3.57e-01 86.4% 70.4%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 44.0 3.04e-01 98.2% 24.8%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 48.0 4.62e-01 100.0% 95.2%
3n0qA01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.52 46.0 3.49e-01 100.0% 54.3%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 39.0 3.80e-01 79.1% 100.0%
7d9cA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.66e-01 76.4% 100.0%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 37.0 3.59e-01 74.5% 95.9%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 35.0 3.31e-01 70.0% 55.0%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 4.12e-01 97.3% 86.5%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 3.09e-01 80.9% 55.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4390303 5.1.3.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.63 49.0 3.08e-01 82.7% 23.9%
3923143 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.63 52.0 4.07e-01 90.9% 80.4%
3763789 220.1.1.186 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CAYP2 0.62 55.0 5.01e-01 99.1% 99.3%
4010371 295.1.1.45 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.61 44.0 4.79e-01 74.5% 97.9%
3295586 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.61 45.0 3.97e-01 81.8% 52.1%
3323226 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 45.0 4.08e-01 81.8% 57.3%
3257265 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 42.0 3.82e-01 82.7% 52.0%
3286735 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.59 41.0 4.55e-01 100.0% 91.8%
3271442 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 51.0 4.66e-01 98.2% 84.0%
3731233 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.57 48.0 4.32e-01 90.0% 68.0%
3785788 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.57 53.0 3.37e-01 100.0% 37.5%
3520126 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.57 51.0 3.60e-01 100.0% 52.2%
3607721 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.57 44.0 3.64e-01 80.9% 75.8%
3517323 3131.1.1.2 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.56 47.0 4.79e-01 93.6% 90.9%
3330702 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 51.0 3.65e-01 100.0% 85.2%
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.56 38.0 4.26e-01 71.8% 96.2%
3351369 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 46.0 4.45e-01 89.1% 84.0%
4973001 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.55 48.0 4.08e-01 98.2% 88.4%
4958749 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.55 48.0 4.08e-01 98.2% 85.3%
3174848 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.55 43.0 3.51e-01 84.5% 70.2%
3785320 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.55 39.0 3.51e-01 74.5% 82.5%
3444104 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 49.0 3.57e-01 100.0% 56.2%
3921266 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.55 49.0 3.15e-01 99.1% 52.0%
3181617 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.54 49.0 3.32e-01 100.0% 42.2%
3452696 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 49.0 3.55e-01 100.0% 37.5%
3686359 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.54 49.0 3.33e-01 99.1% 44.4%
1098206 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.54 34.0 3.57e-01 86.4% 70.4%
3546354 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.53 49.0 3.30e-01 100.0% 46.6%
3466738 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.53 47.0 3.17e-01 100.0% 51.6%
3411789 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 48.0 4.43e-01 100.0% 96.4%
3465992 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 49.0 3.44e-01 100.0% 41.5%
3455310 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 47.0 3.45e-01 100.0% 69.6%
3267359 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 47.0 4.35e-01 100.0% 83.4%
3428912 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 46.0 3.34e-01 99.1% 48.8%
3433328 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 47.0 3.26e-01 100.0% 43.7%
3862116 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 46.0 4.05e-01 97.3% 69.1%
3999197 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.52 47.0 3.27e-01 100.0% 47.8%
3924310 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 47.0 3.24e-01 100.0% 42.2%
3483569 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 3.13e-01 100.0% 43.9%
3218498 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 46.0 3.34e-01 100.0% 51.1%
3556738 220.1.1.40 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.52 43.0 4.19e-01 91.8% 89.6%
3783070 5.1.4.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.52 46.0 3.21e-01 99.1% 46.3%
3468063 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.52 46.0 3.30e-01 100.0% 62.5%
5077760 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.03e-01 99.1% 43.2%
None — 0.52 47.0 3.47e-01 99.1% 40.4%
3263883 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.51 46.0 3.09e-01 100.0% 32.3%
2491359 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.51 38.0 3.59e-01 78.2% 73.5%
3629171 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 43.0 3.98e-01 92.7% 84.8%
3219683 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.51 45.0 4.21e-01 100.0% 89.3%
3441510 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 47.0 3.49e-01 100.0% 48.1%
4019945 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.51 45.0 3.17e-01 100.0% 53.7%
3411355 220.1.1.115 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.51 42.0 3.97e-01 88.2% 83.8%
3196947 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.66e-01 94.5% 16.3%
3256359 5.1.4.151 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.51 43.0 2.73e-01 90.0% 31.1%
3450584 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 46.0 3.33e-01 100.0% 38.4%
3679340 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.50 36.0 3.67e-01 75.5% 78.2%