←Back to structures

NC_042098.1__YP_009621938.1__FDJ23_gp197__00197

Bact-Vir

NC_042098.1__YP_009621938.1__FDJ23_gp197__00197

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-103
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vdrB02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.65 41.0 3.55e-01 100.0% 40.5%
4um8B02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.64 40.0 3.65e-01 100.0% 45.3%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.64 48.0 3.75e-01 100.0% 37.4%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.63 37.0 4.39e-01 100.0% 85.3%
3vi3B02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.63 41.0 3.70e-01 100.0% 46.5%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.60 45.0 4.45e-01 100.0% 74.3%
2luwA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 42.0 4.21e-01 100.0% 74.3%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 52.0 4.08e-01 100.0% 74.2%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 44.0 2.82e-01 99.0% 16.0%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.57 47.0 4.20e-01 100.0% 63.1%
3bpsA02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.57 41.0 3.61e-01 100.0% 50.0%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 5.01e-01 100.0% 98.0%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 42.0 3.99e-01 99.0% 65.5%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.99e-01 100.0% 77.9%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.56 35.0 4.02e-01 99.0% 95.3%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.56 50.0 4.07e-01 100.0% 74.7%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 3.83e-01 100.0% 62.8%
1rc6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 3.17e-01 99.0% 33.1%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 4.54e-01 99.0% 93.6%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.55 49.0 4.32e-01 100.0% 87.9%
2jigA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 48.0 3.83e-01 99.0% 59.7%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.74e-01 99.0% 100.0%
5c5uB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.53 48.0 3.89e-01 100.0% 57.4%
1vphB00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.53 46.0 4.21e-01 100.0% 100.0%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.53 41.0 3.60e-01 99.0% 54.5%
3itqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 46.0 3.81e-01 99.0% 58.4%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 3.76e-01 100.0% 66.4%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.91e-01 100.0% 62.5%
2p6cA00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.52 45.0 4.15e-01 100.0% 100.0%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 3.32e-01 100.0% 44.0%
1gff200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.85e-01 100.0% 89.3%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 3.42e-01 100.0% 48.3%
7zscA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 45.0 3.52e-01 98.0% 50.2%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.59e-01 100.0% 56.0%
3t30C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.50 44.0 4.52e-01 97.0% 100.0%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 44.0 3.83e-01 100.0% 62.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048250 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.63 42.0 4.41e-01 96.0% 75.3%
184925 11.21.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C 0.63 44.0 4.90e-01 98.0% 98.6%
3582449 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.62 42.0 4.82e-01 96.0% 95.9%
5028186 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.61 42.0 4.21e-01 100.0% 68.6%
4946541 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 38.0 4.15e-01 94.0% 78.8%
5055042 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 52.0 5.37e-01 100.0% 100.0%
5014679 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 45.0 4.41e-01 100.0% 75.5%
4540203 11.1.5.85 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.58 46.0 3.79e-01 100.0% 44.6%
3479982 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 49.0 4.49e-01 100.0% 70.0%
3598266 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 50.0 4.42e-01 100.0% 94.0%
3769321 10.32.1.73 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.56 38.0 3.37e-01 100.0% 46.7%
5034162 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.56 45.0 4.50e-01 99.0% 86.0%
3253503 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.56 47.0 4.83e-01 100.0% 98.9%
4089840 11.1.1.577 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PFF1_C 0.56 49.0 3.99e-01 100.0% 52.5%
401494 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.56 40.0 3.83e-01 100.0% 62.8%
4098296 11.1.5.85 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.55 41.0 3.50e-01 100.0% 48.1%
297441 10.2.1.19 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Bromo_coat 0.55 49.0 4.20e-01 100.0% 79.4%
3560442 11.1.1.161 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPPII 0.55 41.0 3.85e-01 100.0% 63.2%
3785848 11.1.1.577 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PFF1_C 0.55 42.0 3.79e-01 99.0% 56.0%
3972190 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.55 42.0 4.17e-01 98.0% 75.9%
3784080 10.32.1.24 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PITH 0.55 49.0 3.90e-01 100.0% 56.6%
3491151 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.98e-01 100.0% 60.7%
3899621 11.1.1.34 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Reeler 0.54 41.0 3.59e-01 100.0% 53.3%
4954390 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 45.0 3.86e-01 100.0% 57.4%
4934400 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 43.0 3.96e-01 100.0% 64.4%
3895708 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 48.0 4.39e-01 100.0% 79.3%
5039365 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 47.0 4.32e-01 100.0% 87.4%
3477632 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 48.0 4.10e-01 100.0% 86.3%
3793143 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.53 47.0 3.94e-01 100.0% 91.4%
3289882 10.12.1.54 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.52 46.0 3.49e-01 100.0% 55.7%
5082908 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 47.0 4.64e-01 100.0% 98.1%
4927104 10.1.2.193 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Thioredoxin_10 0.52 44.0 3.83e-01 100.0% 60.0%
3952750 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.52 38.0 3.85e-01 100.0% 78.0%
4228039 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 41.0 2.69e-01 100.0% 19.8%
None — 0.51 41.0 3.31e-01 100.0% 44.1%
185630 3386.1.1.2 ↗ beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › gp37_C 0.51 39.0 4.12e-01 95.0% 94.4%
3653780 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 41.0 3.21e-01 100.0% 41.0%
3901334 10.32.1.73 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.51 38.0 3.41e-01 100.0% 56.4%
3400156 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 40.0 4.06e-01 97.0% 85.0%
3405117 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 43.0 4.02e-01 100.0% 74.6%
4980801 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 45.0 4.49e-01 100.0% 98.1%
3521987 11.1.1.852 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.50 44.0 3.73e-01 100.0% 65.1%
3412728 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.50 44.0 3.36e-01 100.0% 44.4%