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NC_042098.1__YP_009621952.1__FDJ23_gp211__00211

Bact-Vir

NC_042098.1__YP_009621952.1__FDJ23_gp211__00211

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

65.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-73_129-178
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s9iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 30.0 3.36e-01 100.0% 53.8%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 30.0 3.45e-01 100.0% 61.4%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.62 45.0 3.86e-01 75.2% 96.8%
4af3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 29.0 3.33e-01 100.0% 59.1%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 41.0 4.00e-01 75.2% 61.7%
4anjA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 31.0 3.24e-01 98.3% 51.3%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.59 46.0 3.05e-01 83.8% 38.6%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 33.0 3.09e-01 76.9% 51.0%
2v0cA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.50 37.0 3.37e-01 76.9% 88.1%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 36.0 2.95e-01 74.4% 40.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4953551 4049.1.1.0 ↗ alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like 0.59 27.0 3.52e-01 76.1% 76.9%
3673110 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.59 23.0 3.57e-01 99.1% 100.0%
3901808 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.58 44.0 2.81e-01 80.3% 82.1%
3871338 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.57 44.0 2.88e-01 82.9% 72.4%
4034480 306.9.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › MecA substrate binding domain › MecA substrate binding domain › MecA 0.54 34.0 3.96e-01 99.1% 91.3%
4311026 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.54 42.0 4.15e-01 100.0% 78.4%
4962718 148.1.3.412 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26484 0.53 33.0 3.73e-01 76.1% 85.9%
4318194 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.52 41.0 4.14e-01 100.0% 85.2%
3294207 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.52 39.0 3.21e-01 81.2% 60.0%
4525468 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.52 39.0 4.08e-01 100.0% 87.3%
3403299 358.1.1.0 ↗ a+b complex topology › SRCR-like › SRCR-like › SRCR-like 0.52 27.0 3.61e-01 98.3% 100.0%
4405368 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 40.0 4.01e-01 100.0% 82.5%
D2 high residues 81-122
PDB
Domain cluster: representative
D3 high residues 219-293
PDB
D4 high residues 316-403
PDB