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NC_042098.1__YP_009622020.1__FDJ23_gp279__00279

Bact-Vir

NC_042098.1__YP_009622020.1__FDJ23_gp279__00279

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-109
PDB
Domain cluster: rep: MW845760.1__QXO10274.1__pEaSNUABM37_00315__00313__D3-102
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 40.0 3.90e-01 100.0% 60.2%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 33.0 3.60e-01 95.4% 66.7%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.57 50.0 4.65e-01 98.1% 100.0%
4dyoA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.57 50.0 4.62e-01 99.1% 99.3%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.55 35.0 3.55e-01 91.7% 62.2%
3icuA01 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.55 39.0 3.44e-01 74.1% 100.0%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.54 49.0 4.21e-01 100.0% 99.4%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 34.0 3.25e-01 100.0% 51.9%
5jm6A02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.54 46.0 4.30e-01 99.1% 99.3%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.53 38.0 3.67e-01 75.0% 95.2%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.52 43.0 4.48e-01 100.0% 96.0%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 35.0 3.01e-01 96.3% 40.8%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.56e-01 100.0% 83.5%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 46.0 4.45e-01 99.1% 93.5%
1lb6A00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 44.0 3.93e-01 94.4% 98.7%
1a6cA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.93e-01 98.1% 92.1%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.51 37.0 2.78e-01 75.9% 79.6%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 3.36e-01 75.0% 94.4%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.55e-01 95.4% 79.5%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.51 37.0 3.25e-01 76.9% 85.2%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 46.0 4.29e-01 100.0% 81.8%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.50 32.0 3.28e-01 91.7% 62.7%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 40.0 3.54e-01 99.1% 55.5%
4ae2B02 2.60.120.1000 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.89e-01 100.0% 97.6%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 35.0 3.85e-01 84.3% 98.7%
3dv8A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 36.0 3.33e-01 100.0% 58.3%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 45.0 4.09e-01 100.0% 79.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1883531 11.15.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.57 37.0 3.70e-01 92.6% 62.7%
4988761 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 44.0 4.72e-01 97.2% 98.9%
4015385 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 40.0 3.29e-01 87.0% 40.0%
3715264 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 4.20e-01 79.6% 91.7%
2491328 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.56 38.0 4.21e-01 100.0% 91.5%
4540568 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.55 39.0 3.42e-01 75.9% 92.6%
330281 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.54 50.0 3.82e-01 100.0% 65.5%
4281587 11.1.1.913 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29899 0.54 45.0 3.72e-01 91.7% 87.5%
4335827 11.1.1.612 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF5443 0.53 42.0 3.87e-01 86.1% 84.1%
4019659 220.1.1.213 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7614 0.53 38.0 3.24e-01 75.0% 81.7%
3231372 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.53 46.0 4.40e-01 99.1% 97.7%
4115421 11.15.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.52 34.0 3.34e-01 91.7% 60.0%
3205532 4004.1.1.0 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.52 45.0 3.49e-01 95.4% 82.0%
3716614 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.52 44.0 4.19e-01 91.7% 82.4%
3636807 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.52 41.0 3.03e-01 84.3% 42.1%
3567301 11.10.1.4 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › TRAF-mep_MATH 0.52 45.0 3.93e-01 96.3% 93.9%
3454149 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 46.0 4.30e-01 100.0% 85.2%
3220586 11.1.1.1023 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.52 34.0 3.72e-01 75.9% 81.1%
3448678 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 40.0 3.63e-01 87.0% 61.4%
3648276 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 44.0 4.27e-01 100.0% 83.2%
3605842 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.51 43.0 3.64e-01 92.6% 81.1%
3707711 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 45.0 2.96e-01 99.1% 25.5%