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NC_042098.1__YP_009622043.1__FDJ23_gp302__00302

Bact-Vir

NC_042098.1__YP_009622043.1__FDJ23_gp302__00302

Identity

Accession:
NC_042098 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_vB_EamM_Desertfox

TaxID: 2060127

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-109
PDB
Domain cluster: rep: MW879341.1__QXO10940.1__pEaSNUABM54_00114__00114__D183-275
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 38.0 4.67e-01 74.7% 96.3%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 4.51e-01 92.0% 88.7%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.60 34.0 4.26e-01 85.1% 96.1%
1u7iA01 3.30.720.100 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 36.0 4.12e-01 100.0% 84.8%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 29.0 3.73e-01 70.1% 97.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.54e-01 80.5% 60.2%
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.78e-01 85.1% 68.4%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 39.0 2.74e-01 78.2% 64.9%
6p3qA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 46.0 3.87e-01 98.9% 78.5%
5ywwA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 39.0 3.13e-01 97.7% 36.9%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.77e-01 85.1% 80.4%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 39.0 3.29e-01 100.0% 47.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 43.0 4.26e-01 93.1% 64.2%
4641929 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.61 42.0 3.74e-01 100.0% 49.6%
3621358 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.61 35.0 3.99e-01 83.9% 76.9%
3744194 220.1.1.154 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.60 40.0 3.41e-01 79.3% 41.4%
4965032 375.1.1.343 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.59 37.0 4.46e-01 81.6% 100.0%
4027701 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 34.0 3.24e-01 70.1% 47.0%
3803892 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.58 39.0 4.38e-01 93.1% 93.8%
4253984 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 28.0 3.74e-01 80.5% 97.5%
3707082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.56e-01 97.7% 97.1%
3937157 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.56 33.0 3.60e-01 78.2% 72.9%
5029179 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.55 41.0 3.79e-01 90.8% 61.8%
4311607 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.54 39.0 3.37e-01 100.0% 47.1%
4552570 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 36.0 3.37e-01 75.9% 57.3%
4221476 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.52 43.0 3.33e-01 93.1% 89.0%
3963330 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 44.0 3.88e-01 100.0% 63.8%
4226251 375.1.1.252 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.52 29.0 3.36e-01 86.2% 78.3%
3497893 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 34.0 3.34e-01 71.3% 62.1%
5071916 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.51 37.0 2.86e-01 79.3% 94.1%
3695774 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 36.0 2.40e-01 75.9% 39.7%