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NC_042105.1__YP_009622604.1__FDJ30_gp205__00023

Bact-Vir

NC_042105.1__YP_009622604.1__FDJ30_gp205__00023

Identity

Accession:
NC_042105 ↗
Kingdom:
phage

Quality

60.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wilnyevirus› Streptomyces_phage_BillNye

TaxID: 2079426

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 113-291
PDB
Domain cluster: rep: gwf1_scaffold_41_prodigal-single.1__X__X__00279__D462-593
D2 high residues 536-634
PDB
D3 high residues 756-866
PDB
D4 medium residues 461-497_703-748
PDB
Domain cluster: representative
D5 medium residues 652-699
PDB
Domain cluster: rep: ON453893.1__WAK78966.1__X__00045__D91-145
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.90 78.0 7.87e-01 95.8% 93.8%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.88 79.0 6.18e-01 97.9% 52.6%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.86 75.0 7.34e-01 95.8% 88.2%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.86 69.0 7.13e-01 87.5% 100.0%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.84 74.0 6.42e-01 97.9% 67.1%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.78 68.0 6.21e-01 95.8% 87.1%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.77 68.0 6.32e-01 100.0% 96.7%
3k3sH01 2.30.130.110 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.68 54.0 4.60e-01 89.6% 91.5%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 49.0 5.08e-01 83.3% 84.1%
1r3eA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.66 57.0 4.72e-01 95.8% 90.5%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.15e-01 77.1% 60.0%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.63 48.0 4.05e-01 91.7% 48.8%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.63 47.0 2.74e-01 81.2% 16.5%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 45.0 3.77e-01 93.8% 44.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.70e-01 93.8% 72.6%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 46.0 4.01e-01 93.8% 52.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 53.0 4.72e-01 95.8% 72.7%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 50.0 3.57e-01 97.9% 65.1%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.58 42.0 3.61e-01 95.8% 46.3%
2o3gA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 45.0 3.93e-01 93.8% 55.3%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 37.0 2.99e-01 97.9% 35.5%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.56 41.0 4.18e-01 87.5% 82.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.14e-01 95.8% 71.0%
4k4kA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.56 43.0 3.24e-01 87.5% 37.0%
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.54 44.0 3.75e-01 93.8% 78.0%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 38.0 3.01e-01 79.2% 92.4%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.18e-01 83.3% 47.1%
3dgcS01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 2.96e-01 81.2% 57.8%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.93 82.0 7.62e-01 93.8% 82.8%
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.93 80.0 7.93e-01 95.8% 88.0%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.93 80.0 7.38e-01 91.7% 79.7%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.92 79.0 7.95e-01 91.7% 97.9%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.91 79.0 7.32e-01 93.8% 98.3%
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.91 76.0 7.84e-01 89.6% 100.0%
4444075 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.90 75.0 7.85e-01 91.7% 100.0%
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.89 75.0 7.15e-01 91.7% 96.4%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.88 75.0 7.25e-01 95.8% 83.3%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 76.0 7.40e-01 95.8% 96.2%
3976685 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 76.0 7.31e-01 95.8% 98.1%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.86 78.0 6.97e-01 100.0% 90.8%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.85 74.0 7.32e-01 95.8% 96.0%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.84 77.0 7.58e-01 100.0% 98.0%
4026053 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.84 64.0 7.00e-01 85.4% 97.5%
1291025 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 74.0 6.42e-01 97.9% 67.1%
4149799 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.80 66.0 6.54e-01 91.7% 100.0%
4009012 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.79 67.0 6.13e-01 95.8% 79.7%
8553 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.78 68.0 6.21e-01 95.8% 87.1%
1002430 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 68.0 6.32e-01 100.0% 96.7%
3981632 70.4.1.9 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.77 55.0 5.92e-01 85.4% 90.0%
3222227 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.71 54.0 3.21e-01 87.5% 12.0%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.70 59.0 5.41e-01 100.0% 79.1%
4996605 70.3.1.12 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.69 57.0 4.81e-01 91.7% 95.0%
4031578 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.42e-01 83.3% 68.0%
4398943 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.65 46.0 3.97e-01 85.4% 48.0%
3942241 325.1.7.22 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_CusB 0.64 48.0 4.27e-01 81.2% 71.4%
3502375 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.64 49.0 5.12e-01 81.2% 91.1%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 54.0 4.91e-01 93.8% 73.8%
4962605 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.64 49.0 3.96e-01 85.4% 64.2%
5042815 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.64 52.0 4.42e-01 91.7% 70.0%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 53.0 4.79e-01 91.7% 70.8%
5047208 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.63 49.0 4.71e-01 93.8% 74.5%
4241370 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.62 45.0 3.84e-01 87.5% 47.5%
4963049 4.1.1.486 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7098 0.62 49.0 4.11e-01 85.4% 58.7%
3390825 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.60 44.0 3.98e-01 79.2% 63.1%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 46.0 4.09e-01 85.4% 68.6%
3408090 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 38.0 3.35e-01 77.1% 45.7%
4961832 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.59 42.0 3.66e-01 85.4% 47.5%
3639839 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.56 38.0 3.69e-01 77.1% 62.3%
80910 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.55 44.0 3.72e-01 91.7% 62.8%
3333339 4.8.1.34 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_SEND1 0.55 37.0 3.36e-01 77.1% 52.3%
3528209 1170.1.1.0 ↗ beta barrels › IL8-related › IL8-related › IL8 0.53 39.0 3.41e-01 77.1% 58.6%
3470007 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.53 37.0 3.34e-01 77.1% 53.8%
4507276 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.51 37.0 2.91e-01 79.2% 41.7%
3585503 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.51 36.0 3.46e-01 77.1% 65.5%
4014568 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 37.0 3.54e-01 77.1% 70.9%
3952896 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 35.0 2.64e-01 75.0% 83.9%