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NC_042105.1__YP_009622619.1__FDJ30_gp190__00038

Bact-Vir

NC_042105.1__YP_009622619.1__FDJ30_gp190__00038

Identity

Accession:
NC_042105 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wilnyevirus› Streptomyces_phage_BillNye

TaxID: 2079426

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-75
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3x3nA04 2.40.50.910 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Type VII secretion system EccB, repeat 3 domain 0.83 74.0 6.03e-01 100.0% 66.3%
3gyqA01 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.54 42.0 3.50e-01 98.0% 46.4%
3d40A00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.53 36.0 2.40e-01 75.5% 61.1%
2nttA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 42.0 3.85e-01 100.0% 77.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4123064 3708.1.1.0 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains 0.86 78.0 6.69e-01 100.0% 66.7%
3949804 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.85 76.0 6.90e-01 100.0% 89.2%
3279946 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.84 74.0 6.27e-01 100.0% 76.2%
3955260 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.82 72.0 6.44e-01 100.0% 84.3%
4650134 3708.1.1.0 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains 0.81 73.0 7.34e-01 100.0% 98.0%
4954999 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.61 49.0 3.96e-01 98.0% 52.7%
3286405 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.58 47.0 3.68e-01 98.0% 46.7%
4163152 2484.2.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N 0.58 46.0 4.21e-01 95.9% 100.0%
2833343 3982.1.1.1 ↗ a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › DUF2511 0.57 39.0 3.24e-01 73.5% 72.6%
D2 high residues 82-132
PDB
Domain cluster: rep: IMGVR_UViG_3300000193_000010-3300000193-SI47jul10_135mDRAFT_100036822__D123-171
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3x3mA01 3.30.2390.20 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › Type VII secretion system EccB, repeat 1 domain 0.76 67.0 5.74e-01 100.0% 62.2%
3x3nA04 2.40.50.910 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Type VII secretion system EccB, repeat 3 domain 0.73 63.0 5.28e-01 100.0% 67.4%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.56 40.0 2.89e-01 86.3% 96.9%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.44e-01 82.4% 51.5%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 3.56e-01 80.4% 61.4%
3f59D00 2.60.220.30 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.52 35.0 2.60e-01 70.6% 72.1%
1y2mD01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 40.0 2.75e-01 90.2% 65.5%
1x6hA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 28.0 2.34e-01 94.1% 24.4%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.52 41.0 3.63e-01 98.0% 57.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4670245 3708.1.1.0 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains 0.88 80.0 7.59e-01 100.0% 85.0%
4123064 3708.1.1.0 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains 0.81 67.0 5.91e-01 100.0% 62.7%
5084001 3708.1.1.0 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains 0.80 70.0 5.34e-01 100.0% 94.2%
3950987 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.79 70.0 5.88e-01 100.0% 60.0%
1031167 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.73 64.0 5.37e-01 100.0% 64.4%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.69 45.0 3.77e-01 72.5% 40.0%
3275968 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 48.0 2.92e-01 80.4% 19.3%
3265457 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 46.0 2.78e-01 82.4% 17.6%
5017086 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.59 48.0 3.75e-01 98.0% 54.4%
4943214 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.58 41.0 3.77e-01 76.5% 64.3%
4022057 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.58 46.0 3.80e-01 98.0% 70.0%
5001640 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 40.0 2.59e-01 80.4% 15.0%
5010990 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.56 39.0 3.57e-01 78.4% 60.0%
4993343 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 35.0 3.68e-01 90.2% 73.3%
4995647 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 42.0 4.16e-01 94.1% 96.4%
3719720 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.53 42.0 2.52e-01 94.1% 13.1%
4101593 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.53 37.0 3.55e-01 82.4% 98.6%
4927938 2484.3.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.52 40.0 3.15e-01 88.2% 84.2%
3696561 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.52 37.0 2.75e-01 84.3% 95.9%
3856170 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.51 39.0 2.57e-01 88.2% 39.5%
5029067 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 31.0 3.15e-01 92.2% 60.0%