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NC_042105.1__YP_009622718.1__FDJ30_gp091__00137

Bact-Vir

NC_042105.1__YP_009622718.1__FDJ30_gp091__00137

Identity

Accession:
NC_042105 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wilnyevirus› Streptomyces_phage_BillNye

TaxID: 2079426

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-83
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.78 59.0 4.90e-01 90.8% 47.7%
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 51.0 3.66e-01 87.7% 26.5%
3dr6B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 52.0 3.80e-01 81.5% 63.3%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 42.0 3.99e-01 90.8% 51.9%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 49.0 3.79e-01 83.1% 42.5%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 37.0 3.52e-01 75.4% 48.0%
2ctoA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.62 41.0 4.20e-01 75.4% 70.5%
3jsjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 51.0 3.68e-01 90.8% 67.2%
4fm3A00 1.20.1270.390 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 55.0 4.81e-01 98.5% 83.2%
2qptA01 1.10.268.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › 0.55 46.0 3.50e-01 93.8% 40.4%
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.55 40.0 2.89e-01 78.5% 27.8%
4xaaA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.53 37.0 2.52e-01 73.8% 21.3%
2btoA01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.52 40.0 2.73e-01 86.2% 92.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3691312 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.75 49.0 3.88e-01 70.8% 34.4%
3391350 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.75 54.0 4.27e-01 76.9% 58.5%
5000698 604.38.1.0 ↗ alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle 0.74 43.0 3.61e-01 70.8% 35.2%
5064524 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.71 56.0 4.20e-01 84.6% 72.3%
4444553 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.70 48.0 3.05e-01 70.8% 16.0%
3651438 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.68 52.0 4.36e-01 86.2% 48.2%
3965502 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.68 55.0 4.38e-01 92.3% 43.7%
4184406 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.68 58.0 3.84e-01 93.8% 87.1%
3503756 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 45.0 4.45e-01 83.1% 64.3%
3269731 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 53.0 4.30e-01 89.2% 48.7%
3443494 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.65 55.0 3.94e-01 98.5% 32.1%
3787585 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.65 51.0 4.33e-01 84.6% 75.2%
3397013 148.1.3.60 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF4818 0.64 55.0 4.36e-01 100.0% 82.1%
4013665 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.61 54.0 3.87e-01 95.4% 36.0%
3389798 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.61 41.0 4.06e-01 70.8% 71.4%
3733951 5042.1.1.0 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.58 39.0 3.83e-01 80.0% 64.3%
3184140 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.58 52.0 4.23e-01 96.9% 58.3%
3255530 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.57 46.0 3.96e-01 92.3% 81.8%
3440194 601.3.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PTPLA 0.57 45.0 3.23e-01 90.8% 31.2%
3988260 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 49.0 3.13e-01 100.0% 35.4%
4007989 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.55 45.0 2.77e-01 89.2% 77.3%