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NC_042105.1__YP_009622758.1__FDJ30_gp051__00177

Bact-Vir

NC_042105.1__YP_009622758.1__FDJ30_gp051__00177

Identity

Accession:
NC_042105 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wilnyevirus› Streptomyces_phage_BillNye

TaxID: 2079426

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-86
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 54.0 5.41e-01 88.0% 73.3%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 47.0 4.94e-01 82.7% 77.9%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 51.0 3.65e-01 89.3% 28.5%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 47.0 3.56e-01 74.7% 52.2%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 47.0 4.41e-01 96.0% 62.6%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 44.0 3.36e-01 80.0% 56.3%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 41.0 3.20e-01 73.3% 53.4%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 3.39e-01 76.0% 100.0%
3fh1A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 36.0 3.04e-01 76.0% 38.5%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.03e-01 73.3% 34.0%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 39.0 3.20e-01 74.7% 39.6%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 45.0 3.98e-01 92.0% 79.3%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 3.58e-01 90.7% 77.5%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.85e-01 77.3% 76.5%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 43.0 3.01e-01 89.3% 61.8%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.53 41.0 3.14e-01 82.7% 58.0%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.31e-01 88.0% 47.5%
3plsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 38.0 3.44e-01 76.0% 78.8%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 44.0 3.01e-01 93.3% 59.4%
7bspA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.52 35.0 2.81e-01 70.7% 36.2%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 3.08e-01 77.3% 46.4%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 33.0 2.95e-01 77.3% 43.8%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 42.0 2.85e-01 89.3% 56.6%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 34.0 3.40e-01 81.3% 65.8%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 36.0 3.07e-01 73.3% 46.3%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 40.0 2.81e-01 89.3% 56.6%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 35.0 2.72e-01 76.0% 30.6%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 36.0 3.37e-01 77.3% 81.6%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2987310 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.77 56.0 4.93e-01 93.3% 52.8%
3366565 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.72 54.0 4.70e-01 89.3% 53.6%
3337433 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.72 54.0 5.29e-01 89.3% 73.8%
3509774 329.1.1.0 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain 0.71 64.0 5.16e-01 100.0% 91.7%
4000387 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 39.0 3.50e-01 76.0% 42.9%
3679402 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 54.0 4.15e-01 89.3% 43.1%
4030120 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 48.0 2.94e-01 98.7% 12.0%
5002402 3153.1.1.0 ↗ a+b two layers › PipX › PipX › PipX 0.64 34.0 3.49e-01 70.7% 50.7%
4947486 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 49.0 4.03e-01 89.3% 45.9%
3934844 206.1.1.44 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.63 43.0 2.69e-01 72.0% 49.4%
3773523 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.63 41.0 3.22e-01 74.7% 32.3%
3455406 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.62 44.0 3.75e-01 86.7% 43.8%
5074262 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.62 45.0 3.44e-01 84.0% 32.2%
3284847 243.1.1.80 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.60 43.0 3.87e-01 85.3% 53.7%
3285547 243.1.1.80 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.60 42.0 3.83e-01 82.7% 53.3%
4968133 4312.1.1.1 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.59 39.0 3.68e-01 77.3% 54.8%
3797648 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 41.0 4.01e-01 89.3% 65.9%
5041033 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 4.47e-01 88.0% 86.7%
5073182 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 40.0 3.54e-01 76.0% 49.1%
3985398 11.1.1.39 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_1 0.58 43.0 4.03e-01 80.0% 88.4%
4941435 11.1.1.39 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_1 0.57 46.0 4.23e-01 89.3% 85.0%
5060581 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.39e-01 86.7% 96.2%
3488139 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 46.0 3.42e-01 96.0% 51.2%
3564235 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 43.0 3.65e-01 84.0% 97.6%
3923273 206.1.1.44 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.55 45.0 2.76e-01 86.7% 86.2%
1146580 3308.1.1.2 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme › CarG-like 0.55 45.0 3.55e-01 90.7% 67.7%
3601739 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 48.0 3.27e-01 100.0% 30.7%
4017541 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.53 45.0 2.81e-01 92.0% 82.7%
3699899 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.53 44.0 3.79e-01 92.0% 64.2%
3328359 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 40.0 3.04e-01 82.7% 97.4%
162823 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 40.0 3.56e-01 90.7% 54.7%
3396324 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.52 39.0 4.20e-01 96.0% 90.8%
3297150 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 3.32e-01 73.3% 91.0%
3631248 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.52 46.0 3.85e-01 100.0% 58.4%
3273972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.92e-01 93.3% 81.0%
4943345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.92e-01 93.3% 81.0%
3476563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.38e-01 84.0% 97.5%
3522206 11.1.1.595 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig2 0.50 41.0 3.50e-01 92.0% 84.8%