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NC_042105.1__YP_009622780.1__FDJ30_gp029__00199
Bact-VirNC_042105.1__YP_009622780.1__FDJ30_gp029__00199
Identity
- Accession:
- NC_042105 ↗
- Kingdom:
- phage
Quality
84.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stanwilliamsviridae›
Wilnyevirus›
Streptomyces_phage_BillNye
TaxID: 2079426
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-63
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 58.0 | 5.66e-01 | 98.3% | 74.2% |
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.76 | 52.0 | 5.82e-01 | 100.0% | 93.2% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 55.0 | 4.15e-01 | 100.0% | 78.5% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.61 | 46.0 | 3.89e-01 | 98.3% | 46.8% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.59 | 54.0 | 4.65e-01 | 98.3% | 70.9% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.59 | 50.0 | 3.03e-01 | 100.0% | 55.3% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 39.0 | 2.54e-01 | 100.0% | 14.6% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 50.0 | 3.78e-01 | 100.0% | 81.9% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 38.0 | 4.13e-01 | 91.4% | 85.1% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.56 | 46.0 | 3.04e-01 | 96.6% | 20.1% |
| 3n28A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 47.0 | 3.53e-01 | 98.3% | 62.3% |
| 1vrmA01 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.53 | 41.0 | 2.92e-01 | 91.4% | 87.0% |
| 1cnzA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 45.0 | 2.82e-01 | 100.0% | 86.8% |
| 3oduB01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 46.0 | 2.94e-01 | 100.0% | 55.2% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589429 | 4159.1.1.0 ↗ | alpha arrays › SP0561-like › SP0561-like › SP0561-like | 0.89 | 66.0 | 5.99e-01 | 77.6% | 65.3% |
| 3716015 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.87 | 56.0 | 5.52e-01 | 100.0% | 63.3% |
| 3274542 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.86 | 56.0 | 3.00e-01 | 100.0% | 3.5% |
| 3457988 | 192.14.1.1 ↗ | alpha bundles › Long alpha-hairpin › Siah interacting protein N terminal domain-like › Siah interacting protein N terminal domain-like › Siah-Interact_N | 0.84 | 54.0 | 6.09e-01 | 100.0% | 86.7% |
| 3236725 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.77 | 59.0 | 3.78e-01 | 82.8% | 20.0% |
| 3977558 | 639.2.1.3 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM | 0.77 | 61.0 | 6.25e-01 | 98.3% | 87.3% |
| 3601402 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 58.0 | 3.58e-01 | 100.0% | 74.6% |
| 5015560 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.65 | 61.0 | 4.62e-01 | 100.0% | 64.8% |
| 3367818 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.65 | 54.0 | 3.11e-01 | 93.1% | 13.8% |
| 3472076 | 101.1.1.7 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 | 0.65 | 44.0 | 3.30e-01 | 70.7% | 83.0% |
| 3866268 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.64 | 59.0 | 3.74e-01 | 100.0% | 24.8% |
| 4948342 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.64 | 59.0 | 4.07e-01 | 100.0% | 37.8% |
| 4945817 | 10.28.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 | 0.64 | 59.0 | 4.51e-01 | 100.0% | 48.0% |
| 5072986 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.64 | 58.0 | 4.41e-01 | 100.0% | 46.9% |
| 4295958 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.64 | 56.0 | 3.86e-01 | 100.0% | 63.0% |
| 3810327 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.64 | 49.0 | 2.78e-01 | 86.2% | 14.8% |
| 5006770 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.63 | 35.0 | 2.56e-01 | 94.8% | 20.0% |
| 3825782 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 50.0 | 3.83e-01 | 98.3% | 37.1% |
| 3598536 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 48.0 | 2.75e-01 | 86.2% | 34.5% |
| 3940971 | 109.4.1.1367 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26723 | 0.62 | 50.0 | 2.87e-01 | 89.7% | 23.2% |
| 5061423 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.62 | 51.0 | 3.21e-01 | 94.8% | 37.1% |
| 3420078 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.61 | 52.0 | 2.95e-01 | 96.6% | 15.2% |
| 3325708 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.58 | 48.0 | 3.06e-01 | 93.1% | 25.3% |
| 3367891 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.58 | 48.0 | 3.01e-01 | 94.8% | 28.7% |
| 3463429 | 109.4.1.1335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif | 0.57 | 45.0 | 2.71e-01 | 93.1% | 16.3% |
| 3960319 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.57 | 50.0 | 3.55e-01 | 98.3% | 51.8% |
| 3730463 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 2.99e-01 | 98.3% | 33.8% |
| 3879591 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 47.0 | 2.94e-01 | 100.0% | 39.7% |
| 4142311 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.53 | 40.0 | 2.40e-01 | 89.7% | 43.2% |
| 3238459 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.53 | 43.0 | 4.17e-01 | 98.3% | 81.5% |
| 3401010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 40.0 | 3.38e-01 | 91.4% | 69.6% |
| 3498497 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.52 | 43.0 | 2.91e-01 | 91.4% | 59.6% |
| 4940345 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.51 | 38.0 | 2.96e-01 | 89.7% | 34.1% |
| 3962001 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.51 | 42.0 | 3.32e-01 | 100.0% | 47.9% |
| None | — | 0.51 | 44.0 | 2.80e-01 | 100.0% | 40.0% | |
| 3571482 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 44.0 | 2.78e-01 | 100.0% | 38.7% |