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NC_042105.1__YP_009622781.1__FDJ30_gp028__00200
Bact-VirNC_042105.1__YP_009622781.1__FDJ30_gp028__00200
Identity
- Accession:
- NC_042105 ↗
- Kingdom:
- phage
Quality
95.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stanwilliamsviridae›
Wilnyevirus›
Streptomyces_phage_BillNye
TaxID: 2079426
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-80
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1milA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.69 | 38.0 | 3.41e-01 | 100.0% | 39.4% |
| 1xa6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.68 | 38.0 | 3.47e-01 | 100.0% | 40.4% |
| 3girA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.60 | 43.0 | 4.16e-01 | 85.7% | 67.4% |
| 1wsrA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.59 | 42.0 | 3.98e-01 | 85.7% | 63.7% |
| 4paaA04 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.57 | 40.0 | 3.50e-01 | 85.7% | 47.9% |
| 1yx2A02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.57 | 41.0 | 3.95e-01 | 85.7% | 67.4% |
| 3a8kA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.56 | 39.0 | 3.82e-01 | 80.5% | 64.8% |
| 2f2hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 39.0 | 3.52e-01 | 100.0% | 53.2% |
| 6twjA02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.53 | 41.0 | 3.08e-01 | 89.6% | 95.2% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.52 | 35.0 | 3.38e-01 | 71.4% | 75.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3512824 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.63 | 36.0 | 3.27e-01 | 100.0% | 41.9% |
| 2068689 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.62 | 43.0 | 3.54e-01 | 80.5% | 40.3% |
| 3514549 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 35.0 | 3.20e-01 | 100.0% | 41.9% |
| 3560459 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.61 | 32.0 | 4.02e-01 | 72.7% | 86.7% |
| 3753991 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.61 | 31.0 | 4.00e-01 | 72.7% | 86.7% |
| 3862816 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.61 | 32.0 | 3.46e-01 | 71.4% | 60.9% |
| 3886941 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.59 | 38.0 | 4.22e-01 | 98.7% | 85.0% |
| 3880519 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.59 | 39.0 | 4.14e-01 | 98.7% | 80.0% |
| 3928485 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.58 | 41.0 | 2.81e-01 | 84.4% | 20.0% |
| 4337472 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.57 | 36.0 | 3.38e-01 | 80.5% | 51.6% |
| 3472342 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.57 | 40.0 | 3.57e-01 | 85.7% | 49.2% |
| 2068517 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.57 | 41.0 | 3.19e-01 | 84.4% | 34.5% |
| 3944249 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.53 | 41.0 | 2.73e-01 | 87.0% | 71.2% |
| 3231090 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.52 | 31.0 | 2.95e-01 | 71.4% | 50.0% |
| 3970300 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.51 | 39.0 | 2.66e-01 | 84.4% | 77.4% |