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NC_042105.1__YP_009622787.1__FDJ30_gp022__00206

Bact-Vir

NC_042105.1__YP_009622787.1__FDJ30_gp022__00206

Identity

Accession:
NC_042105 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wilnyevirus› Streptomyces_phage_BillNye

TaxID: 2079426

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-72
PDB
Domain cluster: rep: NC_042105.1__YP_009622582.1__FDJ30_gp001__00001__D6-68
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.77 54.0 4.63e-01 93.8% 49.5%
1zc6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 49.0 3.73e-01 90.6% 32.1%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.67 47.0 4.92e-01 100.0% 82.5%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.64 38.0 3.90e-01 93.8% 59.4%
8gccA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.64 54.0 4.62e-01 93.8% 78.8%
3qx3A04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.64 54.0 4.65e-01 93.8% 86.0%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.62 54.0 4.37e-01 100.0% 57.4%
7s5lA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.62 54.0 3.35e-01 98.4% 38.1%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.60 42.0 3.94e-01 73.4% 74.4%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 44.0 4.20e-01 93.8% 67.5%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 38.0 3.87e-01 90.6% 70.5%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.58 46.0 3.64e-01 90.6% 60.3%
4agsA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 39.0 3.08e-01 73.4% 48.9%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.56 45.0 3.94e-01 93.8% 75.2%
2v6kA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 42.0 3.40e-01 82.8% 90.0%
2ctoA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.55 33.0 3.39e-01 81.2% 60.7%
4a64C03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 37.0 3.21e-01 71.9% 67.0%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 40.0 4.09e-01 84.4% 82.5%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 38.0 2.51e-01 75.0% 43.1%
1khcA02 1.10.720.50 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain 0.53 41.0 4.10e-01 87.5% 92.8%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 45.0 3.98e-01 100.0% 84.8%
3au3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 48.0 3.05e-01 100.0% 23.9%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.53 32.0 3.52e-01 82.8% 79.2%
3lulA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.52 39.0 3.24e-01 90.6% 45.5%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 39.0 4.04e-01 98.4% 85.0%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 44.0 3.78e-01 93.8% 91.2%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 46.0 3.32e-01 100.0% 37.0%
1bgwA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.51 41.0 3.50e-01 92.2% 88.2%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 38.0 2.99e-01 85.9% 77.6%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 39.0 3.37e-01 84.4% 55.3%
2hcmA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 43.0 3.36e-01 100.0% 57.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3556512 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.78 40.0 3.25e-01 92.2% 27.8%
4926999 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.69 60.0 5.32e-01 93.8% 70.0%
4050022 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.68 42.0 4.50e-01 100.0% 72.7%
4387419 378.1.1.5 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_1 0.67 47.0 3.83e-01 100.0% 39.0%
3431353 1128.1.1.10 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › VIN3_C 0.65 37.0 3.64e-01 84.4% 52.9%
3586225 109.4.1.427 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT 0.64 53.0 3.12e-01 90.6% 12.4%
3935542 4016.1.1.1 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.63 54.0 4.08e-01 93.8% 53.3%
5003109 1079.1.1.1 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD 0.63 46.0 3.14e-01 78.1% 68.9%
5018995 1079.1.1.5 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD_2 0.61 52.0 3.57e-01 93.8% 87.3%
3458513 109.4.1.1279 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 0.61 41.0 2.51e-01 100.0% 11.1%
3918267 5054.1.1.58 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › YVC1_C 0.60 50.0 3.25e-01 93.8% 38.3%
4995756 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.34e-01 100.0% 76.9%
3630666 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 44.0 3.43e-01 100.0% 37.9%
4941477 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.19e-01 96.9% 83.0%
3727652 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.57 50.0 4.02e-01 93.8% 67.8%
4992317 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 3.92e-01 100.0% 68.8%
3943851 213.1.1.60 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_5 0.56 49.0 3.21e-01 100.0% 22.1%
3755714 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 45.0 3.11e-01 93.8% 50.0%
3261605 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.56 47.0 4.39e-01 93.8% 97.5%
4397698 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.56 49.0 4.03e-01 100.0% 72.5%
147042 3254.1.1.1 ↗ alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.55 40.0 3.60e-01 78.1% 97.8%
3309133 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 40.0 3.69e-01 96.9% 58.8%
5080013 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 50.0 3.33e-01 100.0% 50.6%
3237792 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.55 39.0 3.76e-01 98.4% 65.3%
3391232 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.54 45.0 2.72e-01 95.3% 33.9%
3734260 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.54 48.0 3.36e-01 98.4% 91.2%
4961037 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 34.0 3.62e-01 84.4% 72.7%
2391702 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.54 40.0 2.73e-01 100.0% 21.7%
4600608 244.3.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.54 45.0 3.58e-01 95.3% 65.2%
4238706 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.53 42.0 2.91e-01 98.4% 48.9%
4025859 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.53 36.0 3.32e-01 70.3% 76.2%
4011005 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.53 36.0 3.63e-01 79.7% 71.9%
3406010 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 46.0 4.02e-01 100.0% 72.0%
4599937 3754.1.1.0 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related 0.52 42.0 2.65e-01 93.8% 17.9%
3247967 101.1.1.28 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.51 40.0 3.52e-01 82.8% 64.4%
5050290 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 43.0 2.87e-01 100.0% 49.8%
3580853 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 4.14e-01 96.9% 87.7%
3263557 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 44.0 3.61e-01 100.0% 77.5%
3873240 378.1.1.25 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › MH1+NfI_DNAbd_pre-N 0.50 40.0 3.02e-01 95.3% 70.8%
3302022 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 38.0 3.27e-01 89.1% 52.0%