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NC_042106.1__YP_009622806.1__FDJ31_gp08__00008

Bact-Vir

NC_042106.1__YP_009622806.1__FDJ31_gp08__00008

Identity

Accession:
NC_042106 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bingvirus› Streptomyces_phage_Bing

TaxID: 2079427

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-106
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.77 39.0 4.52e-01 74.1% 67.2%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.73 43.0 4.66e-01 75.3% 68.5%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.70 41.0 4.25e-01 75.3% 61.7%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.66 43.0 3.72e-01 83.5% 44.2%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 41.0 3.91e-01 74.1% 57.7%
2h21A02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.61 39.0 3.07e-01 75.3% 33.3%
3smtA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.58 37.0 2.97e-01 75.3% 34.1%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.57 39.0 3.62e-01 75.3% 56.1%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 40.0 4.41e-01 72.9% 87.3%
5yk4A03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 41.0 3.46e-01 76.5% 75.5%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.56 46.0 4.43e-01 88.2% 94.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 38.0 3.37e-01 76.5% 53.0%
3ii9B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 35.0 3.12e-01 92.9% 46.9%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 44.0 3.73e-01 100.0% 76.5%
4nqwB00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.51 28.0 3.04e-01 96.5% 61.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528346 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.77 41.0 3.20e-01 75.3% 26.7%
3279737 564.1.1.4 ↗ alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › RskA_N 0.70 32.0 3.81e-01 90.6% 61.7%
3925558 551.1.1.1 ↗ alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.69 45.0 3.65e-01 85.9% 38.6%
4883033 1030.1.1.1 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.62 45.0 4.08e-01 75.3% 79.6%
5060491 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.61 45.0 3.92e-01 75.3% 53.3%
4997481 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.58 49.0 4.65e-01 90.6% 84.0%
3443676 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 49.0 4.64e-01 91.8% 76.0%
3489682 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.58 38.0 3.99e-01 82.4% 74.7%
3923696 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.57 35.0 3.53e-01 88.2% 58.9%
5032990 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.56 34.0 3.69e-01 83.5% 72.9%
4499046 622.4.1.56 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF3713 0.56 40.0 3.69e-01 75.3% 62.7%
3489683 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.54 39.0 4.14e-01 78.8% 86.7%
3468446 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.54 48.0 3.99e-01 96.5% 97.2%
1143835 131.2.1.1 ↗ alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd 0.53 42.0 3.04e-01 95.3% 28.3%
3473557 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.53 37.0 3.86e-01 83.5% 78.8%
3199743 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.50 44.0 3.41e-01 97.6% 93.3%